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Updated: Nov 14, 2025

Brain Infarct Segmentation and Registration on MRI or CT for Lesion-symptom Mapping
Published on: September 25, 2019
Use of a convolutional neural network to identify infarct core using computed tomography perfusion parameters
Ryan A Rava1,2, Alexander R Podgorsak1,2,3, Muhammad Waqas2,4
1Department of Biomedical Engineering, University at Buffalo, Buffalo NY, 14260.
This study shows that cerebral blood flow (CBF) is the most accurate computed tomography perfusion (CTP) parameter for segmenting ischemic stroke infarct tissue. A convolutional neural network (CNN) approach can eliminate the need for non-universal CTP thresholds.
Area of Science:
- Neurology
- Radiology
- Medical Imaging
Background:
- Ischemic stroke diagnosis relies on computed tomography perfusion (CTP) imaging.
- Contralateral hemisphere comparisons of CTP parameters are standard but face challenges due to varying software and patient hemodynamics.
- Existing methods often require non-universal thresholds for accurate infarct tissue segmentation.
Purpose of the Study:
- To evaluate the efficacy of a convolutional neural network (CNN) for segmenting infarct tissue in ischemic stroke.
- To determine the most accurate CTP parameter for infarct segmentation using a CNN approach.
- To eliminate the need for non-universal CTP parameter thresholds in stroke imaging.
Main Methods:
- Retrospective analysis of CTP data from 63 ischemic stroke patients.
- Generation of CTP parameter maps (CBF, CBV, TTP, MTT, delay time) using Vitrea CTP software.
- Training and testing a U-net based CNN on 8,352 infarct slices, with Monte Carlo cross-validation, comparing CTP parameters against diffusion-weighted imaging (DWI) ground truth.
Main Results:
- Cerebral blood flow (CBF) demonstrated the highest spatial agreement (Dice coefficient=0.67, PPV=0.76) in predicting infarct volumes.
- CBF showed the smallest volume difference (14.3±11.5 mL) compared to DWI infarct volumes.
- Other CTP parameters like CBV, TTP, MTT, and delay time showed lower agreement and larger volume discrepancies.
Conclusions:
- Cerebral blood flow (CBF) is the most accurate CTP parameter for infarct segmentation.
- CNN-based infarct segmentation offers a promising method to overcome limitations of non-universal CTP thresholds.
- This approach could standardize infarct volume assessment in ischemic stroke patients.
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