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Updated: Nov 13, 2025

Author Spotlight: Integrating BRET-Based Assays and Rare Mutation Analysis to Decipher RAF Kinase Regulation in Live Cells
Published on: March 1, 2024
B-Raf autoinhibition in the presence and absence of 14-3-3
Mingzhen Zhang1, Hyunbum Jang1, Zhigang Li2
1Computational Structural Biology Section, Frederick National Laboratory for Cancer Research in the Laboratory of Cancer ImmunoMetabolism, National Cancer Institute, Frederick, MD 21702, USA.
Abstract:
Raf-activating mutations are frequent in cancer. In the basal state, B-Raf is autoinhibited by its upstream Ras-binding domain (RBD) and cysteine-rich domain (RBD-CRD) interacting with its kinase domain (KD) and the 14-3-3 dimer. Our comprehensive molecular dynamics simulations explore two autoinhibition scenarios in the presence and absence of the 14-3-3 dimer. When present, the 14-3-3 interaction with B-Raf stabilizes the RBD-CRD-KD interaction, interfering with the KD dimerization. Raf's pSer365 removal fails to induce large disruption. RBD-CRD release promotes KD fluctuations and reorientation for dimerization, consistent with experimental data. In the absence of 14-3-3, our sampled B-Raf conformations suggest that RBD-CRD can block the KD dimerization surface. Our results suggest a B-Raf activation mechanism, whereby one KD monomer is donated by 14-3-3-free B-Raf KD and the other by 14-3-3-bound KD. This mechanism can lead to homo- and heterodimers. These autoinhibition scenarios can transform autoinhibited B-Raf monomers into active B-Raf dimers.
Insights
B-Raf protein remains inactive through autoinhibition. Molecular dynamics simulations reveal how the 14-3-3 dimer influences B-Raf
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- B-Raf mutations are common drivers in various cancers.
- B-Raf protein exists in an autoinhibited state via interactions between its domains and the 14-3-3 dimer.
Purpose of the Study:
- To investigate the molecular mechanisms of B-Raf autoinhibition using computational simulations.
- To explore the role of the 14-3-3 dimer in regulating B-Raf activity.
Main Methods:
- Comprehensive molecular dynamics simulations were employed.
- Two autoinhibition scenarios were analyzed: with and without the 14-3-3 dimer.
Main Results:
- The 14-3-3 dimer stabilizes B-Raf autoinhibition by preventing kinase domain dimerization.
- In the absence of 14-3-3, B-Raf's Ras-binding and cysteine-rich domains can obstruct kinase domain dimerization.
- Simulations suggest a B-Raf activation mechanism involving contributions from both 14-3-3-bound and 14-3-3-free B-Raf kinase domains.
Conclusions:
- B-Raf autoinhibition is regulated by domain interactions and the presence of the 14-3-3 dimer.
- These findings elucidate a potential mechanism for B-Raf activation, leading to homo- and heterodimer formation.
- Understanding these mechanisms could inform targeted cancer therapies.
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