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Updated: Nov 12, 2025

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Targeting loss of heterozygosity for cancer-specific immunotherapy
Michael S Hwang1,2,3, Brian J Mog1,2,3,4, Jacqueline Douglass1,2,3
1Ludwig Center, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Abstract:
Developing therapeutic agents with potent antitumor activity that spare normal tissues remains a significant challenge. Clonal loss of heterozygosity (LOH) is a widespread and irreversible genetic alteration that is exquisitely specific to cancer cells. We hypothesized that LOH events can be therapeutically targeted by "inverting" the loss of an allele in cancer cells into an activating signal. Here we describe a proof-of-concept approach utilizing engineered T cells approximating NOT-gate Boolean logic to target counterexpressed antigens resulting from LOH events in cancer. The NOT gate comprises a chimeric antigen receptor (CAR) targeting the allele of human leukocyte antigen (HLA) that is retained in the cancer cells and an inhibitory CAR (iCAR) targeting the HLA allele that is lost in the cancer cells. We demonstrate that engineered T cells incorporating such NOT-gate logic can be activated in a genetically predictable manner in vitro and in mice to kill relevant cancer cells. This therapeutic approach, termed NASCAR (Neoplasm-targeting Allele-Sensing CAR), could, in theory, be extended to LOH of other polymorphic genes that result in altered cell surface antigens in cancers.
Insights
Engineered T cells with NOT-gate logic target cancer cells by recognizing allele-specific antigens resulting from loss of heterozygosity (LOH). This approach, NASCAR, offers a novel strategy for cancer therapy by exploiting cancer-specific genetic alterations.
Area of Science:
- Oncology
- Immunotherapy
- Genetics
Background:
- Developing targeted cancer therapies that spare normal tissues is a critical challenge.
- Clonal loss of heterozygosity (LOH) is a cancer-specific genetic alteration.
- Targeting LOH events could provide a unique therapeutic window.
Purpose of the Study:
- To develop a proof-of-concept for targeting LOH events in cancer using engineered T cells.
- To create a NOT-gate logic system for T cells to distinguish cancer cells based on LOH.
- To investigate the therapeutic potential of allele-sensing chimeric antigen receptors (CARs).
Main Methods:
- Engineered T cells with a NOT-gate comprising a chimeric antigen receptor (CAR) and an inhibitory CAR (iCAR).
- CAR targeted the retained human leukocyte antigen (HLA) allele, while iCAR targeted the lost HLA allele.
- In vitro and in vivo (mice) experiments to assess T cell activation and cancer cell killing.
Main Results:
- Engineered T cells demonstrated genetically predictable activation.
- The NOT-gate logic successfully enabled T cells to target cancer cells with specific LOH patterns.
- Demonstrated in vitro and in vivo efficacy in killing relevant cancer cells.
Conclusions:
- Engineered T cells with NOT-gate logic can effectively target cancer cells by exploiting LOH-specific antigens.
- The Neoplasm-targeting Allele-Sensing CAR (NASCAR) approach shows promise for cancer immunotherapy.
- This strategy could be extended to target LOH of other polymorphic genes in various cancers.
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