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Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge.

Lance M Hannestad^1,2, Vlado Dančík³, Meera Godden^1,2

¹STAR Informatics / Delphinai Corporation, Sooke, BC, Canada.

|March 23, 2021

Summary

This open-source API and software facilitate access to the Translator Knowledge Beacon, enabling broader research and data integration. Explore the code and contribute to advancing biomedical data sharing.

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Area of Science:

Biomedical Informatics
Knowledge Representation
Data Sharing Standards

Background:

The Translator program aims to integrate biomedical data sources.
A standardized knowledge beacon is crucial for accessing this integrated data.
Open-source solutions promote collaboration and accessibility in biomedical research.

Purpose of the Study:

To release the open-source API and associated software for the Translator Knowledge Beacon.
To provide a publicly accessible platform for researchers to interact with biomedical knowledge graphs.
To foster community engagement and development of the knowledge beacon.

Main Methods:

Development of a RESTful API adhering to open standards.
Implementation of software for data aggregation and querying.
Public release of source code on a code repository (GitHub).

Main Results:

The Translator Knowledge Beacon API and software are now open source.
The codebase is available for download and use at the provided GitHub URL.
This release enables external developers and researchers to leverage the beacon's capabilities.

Conclusions:

The open-source release democratizes access to the Translator Knowledge Beacon.
Availability of the code encourages transparency, reproducibility, and further innovation.
Community contributions are expected to enhance the beacon's functionality and data coverage.