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Encapsulation state of messenger RNA inside lipid nanoparticles
Mark L Brader1, Sean J Williams1, Jessica M Banks1
1Moderna, Inc., Cambridge, Massachusetts.
Biophysical Journal
|March 28, 2021
Summary
Thionine dye visualizes messenger RNA (mRNA) within lipid nanoparticles using cryo-electron microscopy. This reveals mRNA
Area of Science:
- Biochemistry
- Nanotechnology
- Microscopy
Background:
- Lipid nanoparticles (LNPs) are crucial for delivering messenger RNA (mRNA) therapeutics.
- Understanding the internal structure and mRNA localization within LNPs is essential for optimizing LNP design and efficacy.
- Current methods for visualizing mRNA within LNPs can be limited.
Purpose of the Study:
- To develop a novel method for visualizing the microenvironment of mRNA within lipid nanoparticles.
- To investigate the localization and association of mRNA molecules inside LNPs using cryo-electron microscopy.
- To assess the utility of thionine as a contrasting agent for cryo-electron microscopy of LNPs.
Main Methods:
- Utilized thionine, a cationic dye, as a contrasting agent for cryogenic electron microscopy (cryo-EM).
- Applied thionine selectively to bind with encapsulated mRNA within lipid nanoparticles.
- Analyzed cryo-EM images to determine the location and distribution of mRNA within the LNP structure.
Main Results:
- Thionine selectively binds to mRNA within LNPs without altering nanoparticle structure.
- Cryo-EM imaging with thionine successfully visualized mRNA localization.
- Results indicate that mRNA can be found in solvent-filled cavities or associated with the lipid components of the nanoparticles.
Conclusions:
- Thionine is an effective contrasting agent for cryo-EM visualization of mRNA in LNPs.
- The study provides new insights into the structural organization of mRNA within LNPs.
- This technique advances the understanding of LNP internal environments, crucial for therapeutic development.

