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Updated: Nov 9, 2025

Protocols for Analyzing the Role of Paneth Cells in Regenerating the Murine Intestine using Conditional Cre-lox Mouse Models
Published on: November 21, 2015
Efferocytosis by Paneth cells within the intestine
Laura S Shankman1, Samantha T Fleury1, W Britt Evans2
1Center for Cell Clearance, University of Virginia, Jeanette Lancaster Way, Charlottesville, VA 22908, USA; Department of Microbiology, Immunology, and Cancer Biology, Jefferson Park Avenue, University of Virginia, Charlottesville, VA 22908, USA.
Paneth cells, located in the intestine, unexpectedly act as phagocytes, engulfing dying intestinal epithelial cells (iECs). This efferocytosis by Paneth cells helps reduce inflammation after radiation therapy, supporting intestinal health.
Area of Science:
- Gastroenterology
- Immunology
- Cell Biology
Background:
- Efferocytosis, the engulfment of apoptotic cells, is crucial for debris removal and reducing inflammation.
- Intestinal epithelial cells (iECs) undergo apoptosis due to DNA damage from irradiation, chemotherapy, or inflammation.
- The role of phagocytosis in clearing dying iECs, particularly by non-professional phagocytes, is poorly understood.
Purpose of the Study:
- To investigate the efferocytic capacity of Paneth cells in the intestinal crypt.
- To determine if Paneth cells engulf dying intestinal epithelial cells (iECs).
- To assess the role of Paneth cell-mediated efferocytosis in response to irradiation-induced iEC apoptosis.
Main Methods:
- In vitro efferocytosis assays.
- Ex vivo studies using intestinal organoids (enteroids).
- In vivo experiments involving Cre-mediated deletion of Paneth cells in mice.
- Exposure to low-dose cesium-137 (137Cs) irradiation to induce iEC apoptosis.
Main Results:
- Paneth cells were identified as phagocytes capable of engulfing dying neighboring intestinal epithelial cells (iECs).
- Paneth cell-mediated efferocytosis was observed ex vivo and in vivo, particularly after irradiation.
- This efferocytic function of Paneth cells was demonstrated in models mimicking radiation therapy.
Conclusions:
- Paneth cells possess an unexpected phagocytic role in clearing apoptotic intestinal epithelial cells (iECs).
- Paneth cell-mediated efferocytosis contributes to intestinal health, especially following radiation-induced damage.
- These findings reveal a novel mechanism by which Paneth cells support intestinal homeostasis and have implications for inflammatory bowel disease and cancer therapy.
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