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Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Adenosine Kinase Expression Determines DNA Methylation in Cancer Cell Lines
Amir E Wahba1, Denise Fedele1, Hoda Gebril1
1Department of Neurosurgery, Robert Wood Johnson Medical School, Rutgers University, Piscataway, New Jersey 08854, United States.
Abstract:
DNA methylation has a major role in cancer, and its inhibitors are used therapeutically. DNA methylation depends on methyl group flux through the transmethylation pathway, which forms adenosine. We hypothesized that an adenosine kinase isoform with nuclear expression (ADK-L) determines global DNA methylation in cancer cells. We quantified ADK-L expression (Western Blot) and global DNA methylation as percent 5-methyldeoxycytidine (5mdC, LC-MS/MS) in three cancer lines (HeLa, HepG2, and U373). ADK-L expression and global DNA methylation correlated positively with the highest levels in HeLa cells compared to U373 and HepG2 cells. To determine whether ADK increases global DNA methylation and to validate its potential therapeutics, we treated HeLa cells with potent ADK inhibitors MRS4203 and MRS4380 (IC50 88 and 140 nM, respectively). Both nucleosides, but not a structurally related poor ADK inhibitor, significantly reduced global DNA methylation in HeLa cells in a concentration-dependent manner. Thus, ADK-L is a potential target for the therapeutic manipulation of DNA methylation levels in cancer.
Insights
Adenosine kinase isoform ADK-L influences DNA methylation in cancer cells. Inhibiting ADK-L significantly reduces global DNA methylation, suggesting it as a therapeutic target for cancer treatment.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- DNA methylation is crucial in cancer development and is targeted by therapies.
- The transmethylation pathway, essential for DNA methylation, involves adenosine.
- Adenosine kinase isoform with nuclear expression (ADK-L) is hypothesized to regulate global DNA methylation.
Purpose of the Study:
- To investigate the role of ADK-L in determining global DNA methylation levels in cancer cells.
- To assess the therapeutic potential of targeting ADK-L for manipulating DNA methylation in cancer.
Main Methods:
- Quantification of ADK-L expression using Western Blot.
- Measurement of global DNA methylation (percent 5-methyldeoxycytidine) via LC-MS/MS.
- Treatment of cancer cell lines (HeLa, HepG2, U373) with ADK inhibitors (MRS4203, MRS4380).
Main Results:
- ADK-L expression and global DNA methylation showed a positive correlation, highest in HeLa cells.
- Potent ADK inhibitors significantly reduced global DNA methylation in HeLa cells in a dose-dependent manner.
- A poor ADK inhibitor did not affect DNA methylation levels, confirming ADK specificity.
Conclusions:
- ADK-L plays a significant role in regulating global DNA methylation in cancer cells.
- ADK-L is a potential therapeutic target for modulating DNA methylation in cancer treatment.
- Targeting ADK-L offers a novel strategy for cancer therapy by altering DNA methylation patterns.
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