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Updated: Nov 8, 2025

A Scalable, Cell-Based Method for the Functional Assessment of Ube3a Variants
Published on: October 10, 2022
PP2A and E3 ubiquitin ligase deficiencies: Seminal biological drivers in endometrial cancer
Jesus Gonzalez-Bosquet1, Jamie N Bakkum-Gamez2, Amy L Weaver3
1Department of Obstetrics and Gynecology, University of Iowa, Iowa City, IA, United States of America.
Objective:
PI3K-AKT pathway mutations initiate a kinase cascade that characterizes endometrial cancer (EC). As kinases seldom cause oncogenic transformation without dysregulation of antagonistic phosphatases, pivotal interactions governing this pathway were explored and correlated with clinical outcomes.
Methods:
After exclusion of patients with POLE mutations from The Cancer Genome Atlas EC cohort with endometrioid or serous EC, the study population was 209 patients with DNA sequencing, quantitative gene-specific RNA expression, copy number variation (CNV), and surveillance data available. Extracted data were annotated and integrated.
Results:
A PIK3CA, PTEN, or PIK3R1 mutant (-mu) was present in 83% of patients; 57% harbored more than 1 mutation without adversely impacting progression-free survival (PFS) (P = .10). PIK3CA CNV of at least 1.1 (CNV high [-H]) was detected in 26% and linked to TP53-mu and CIP2A expression (P < .001) but was not associated with PFS (P = .24). PIK3CA expression was significantly different between those with CIP2A-H and CIP2A low (-L) expression (the endogenous inhibitor of protein phosphatase 2A [PP2A]), when stratified by PIK3CA mutational status or by PIK3CA CNV-H and CNV-L (all P < .01). CIP2A-H or PPP2R1A-mu mitigates PP2A kinase dephosphorylation, and FBXW7-mu nullifies E3 ubiquitin ligase (E3UL) oncoprotein degradation. CIP2A-H and PPP2R1A-mu (PP2A impairment) and FBXW7-mu (E3UL impairment) were associated with compromised PFS (P < .001) and were prognostically discriminatory for PIK3CA-mu and PIK3CA CNV-H tumors (P < .001). Among documented recurrences, 84% were associated with impaired PP2A (75%) and/or E3UL (20%).
Conclusion:
PP2A and E3UL deficiencies are seminal biological drivers in EC independent of PIK3CA-mu, PTEN-mu, and PIK3R1-mu and PIK3CA CNV.
Insights
Endometrial cancer (EC) involves PI3K-AKT pathway mutations. Deficiencies in protein phosphatase 2A (PP2A) and E3 ubiquitin ligase (E3UL) drive EC progression, independent of common mutations, impacting patient outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Endometrial cancer (EC) is characterized by mutations in the PI3K-AKT pathway, a critical signaling cascade.
- Kinase activity alone rarely drives oncogenesis; dysregulation of opposing phosphatases is crucial for pathway activation.
- Understanding the interplay between kinases and phosphatases in EC is vital for identifying prognostic markers and therapeutic targets.
Purpose of the Study:
- To investigate the interactions between PI3K-AKT pathway components and antagonistic phosphatases in endometrial cancer.
- To correlate these molecular interactions with clinical outcomes, specifically progression-free survival (PFS).
Main Methods:
- Analysis of The Cancer Genome Atlas (TCGA) EC cohort (n=209), excluding POLE mutations.
- Integration of DNA sequencing, RNA expression, and copy number variation (CNV) data.
- Correlation of PIK3CA, PTEN, PIK3R1 mutations, PIK3CA CNV, and expression of CIP2A (PP2A inhibitor) and FBXW7 (E3UL) with PFS.
Main Results:
- 83% of patients had mutations in PIK3CA, PTEN, or PIK3R1, with 57% having multiple mutations, but this did not significantly impact PFS.
- PIK3CA copy number variations (CNV) were linked to TP53 mutations and CIP2A expression but not PFS.
- Impaired protein phosphatase 2A (PP2A) and E3 ubiquitin ligase (E3UL) function, indicated by CIP2A overexpression or specific mutations, were significantly associated with compromised PFS and were prognostic for PIK3CA-altered tumors.
Conclusions:
- Deficiencies in PP2A and E3UL are key drivers of endometrial cancer progression.
- These deficiencies are biologically significant in EC, irrespective of PIK3CA, PTEN, or PIK3R1 mutations or PIK3CA CNV.
- Targeting PP2A and E3UL pathways may offer novel therapeutic strategies for endometrial cancer.
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