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CyTOF: An Emerging Technology for Single-Cell Proteomics in the Mouse
Lauren J Tracey1,2, Yeji An1,3, Monica J Justice1,2
1Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Current Protocols
|April 22, 2021
Summary
Mass cytometry (CyTOF) and imaging mass cytometry (IMC) enable high-dimensional proteomic analysis of single cells and tissues. These techniques advance understanding of complex diseases and drive therapeutic discovery.
Area of Science:
- Proteomics
- Single-cell analysis
- Biotechnology
Background:
- Single-cell proteome analysis is crucial for understanding biological processes and diseases.
- Mass cytometry (CyTOF) integrates mass spectrometry and flow cytometry for high-parameter single-cell protein analysis.
- Imaging mass cytometry (IMC) extends CyTOF to visualize protein expression in tissues in situ.
Purpose of the Study:
- To describe the CyTOF experimental workflow, including reagent selection, sample preparation, and data analysis.
- To compare CyTOF with flow cytometry, highlighting their respective strengths and weaknesses.
- To review studies utilizing CyTOF and IMC in mouse models of human disease to demonstrate their discovery potential.
Main Methods:
- Mass cytometry (CyTOF) for high-dimensional single-cell protein quantification.
- Imaging mass cytometry (IMC) for in situ tissue proteomic visualization.
- Comparative analysis with traditional flow cytometry.
Main Results:
- CyTOF and IMC can measure 40 to 100 parameters per cell, providing deep proteomic insights.
- These techniques facilitate visualization and analysis of complex cellular and tissue environments.
- Studies in disease models showcase the power of CyTOF and IMC in driving research and therapeutic advancements.
Conclusions:
- CyTOF and IMC are powerful tools for high-dimensional proteomic analysis at the single-cell and tissue levels.
- These technologies significantly enhance the understanding of complex biological pathways and disease mechanisms.
- The application of CyTOF and IMC holds great promise for accelerating discovery research and therapeutic development.

