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Related Concept Videos

Epigenetic Regulation01:37

Epigenetic Regulation

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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
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Cell-Specific Paired Interrogation of the Mouse Ovarian Epigenome and Transcriptome
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Decoding dynamic epigenetic landscapes in human oocytes using single-cell multi-omics sequencing.

Rui Yan1, Chan Gu1, Di You1

  • 1Center for Translational Medicine, Ministry of Education Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Obstetrics and Gynecology, West China Second Hospital, Sichuan University, Chengdu, Sichuan 610041, China.

Cell Stem Cell
|May 6, 2021
PubMed
Summary
This summary is machine-generated.

This study introduces scChaRM-seq, a new method to map DNA methylation, gene activity, and chromatin accessibility in single human oocytes. It reveals how these factors interact during oocyte development and gene regulation.

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Area of Science:

  • Reproductive biology
  • Epigenetics
  • Genomics

Background:

  • Epigenetic reprogramming is crucial for female germ cell development.
  • Understanding DNA methylation dynamics in oocytes is limited.

Purpose of the Study:

  • To develop a single-cell multi-omics method for profiling DNA methylation, transcriptome, and chromatin accessibility.
  • To investigate de novo DNA methylation dynamics in human oocytes.

Main Methods:

  • Developed scChaRM-seq (single-cell Chromatin, RNA, and Methylome sequencing).
  • Simultaneously profiled DNA methylome, transcriptome, and chromatin accessibility in single human oocytes and ovarian somatic cells.

Main Results:

  • Observed global DNA methylation increase during human oocyte growth, correlating with chromatin accessibility.
  • Found specific DNA methylation increases linked to active transcription.
  • Identified species-specific gene expression and promoter accessibility influencing gene body methylation.
  • Alu elements remained hypomethylated and accessible near developmental genes.

Conclusions:

  • scChaRM-seq provides novel insights into DNA methylation pattern establishment during oocyte development.
  • Revealed interplay between DNA methylation, chromatin accessibility, and transcription in human oocytes.