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Engineering Antiviral Agents via Surface Plasmon Resonance
Published on: June 14, 2022
A Structural Landscape of Neutralizing Antibodies Against SARS-CoV-2 Receptor Binding Domain
Ling Niu1, Kathryn N Wittrock1, Gage C Clabaugh1
1Department of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, Ames, IA, United States.
Abstract:
SARS-CoV-2, the novel coronavirus responsible for the ongoing COVID-19 pandemic, has been spreading rampantly. The global scientific community has responded rapidly to understand immune correlates of protection to develop vaccines and immunotherapeutics against the virus. The major goal of this mini review is to summarize current understanding of the structural landscape of neutralizing antibodies (nAbs) that target the receptor binding domain (RBD) of viral spike (S) glycoprotein. The RBD plays a critical role in the very first step of the virus life cycle. Better understanding of where and how nAbs bind the RBD should enable identification of sites of vulnerability and facilitate better vaccine design and formulation of immunotherapeutics. Towards this goal, we compiled 38 RBD-binding nAbs with known structures. Review of these nAb structures showed that (1) nAbs can be divided into five general clusters, (2) there are distinct non-neutralizing faces on the RBD, and (3) maximum of potentially four nAbs could bind the RBD simultaneously. Since most of these nAbs were isolated from virus-infected patients, additional analyses of vaccine-induced nAbs could facilitate development of improved vaccines.
Insights
Neutralizing antibodies targeting the SARS-CoV-2 spike protein
Area of Science:
- Immunology
- Virology
- Structural Biology
Background:
- The COVID-19 pandemic necessitates understanding immune responses to SARS-CoV-2.
- Neutralizing antibodies (nAbs) are crucial for viral control.
- The spike (S) glycoprotein's receptor binding domain (RBD) is a key target for nAbs.
Purpose of the Study:
- To review the structural characteristics of nAbs targeting the SARS-CoV-2 RBD.
- To identify vulnerable sites on the RBD for therapeutic and vaccine development.
Main Methods:
- Compilation of 38 RBD-binding nAbs with available structural data.
- Analysis of structural data to determine antibody binding modes and clusters.
Main Results:
- RBD-binding nAbs can be classified into five distinct structural clusters.
- Specific non-neutralizing faces on the RBD were identified.
- The RBD can potentially accommodate up to four nAbs concurrently.
Conclusions:
- Structural insights into nAb-RBD interactions reveal potential targets for intervention.
- Understanding nAb binding can guide the design of more effective vaccines and immunotherapeutics.
- Further analysis of vaccine-induced nAbs is recommended for improved vaccine strategies.
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