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Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing
Published on: August 25, 2018
Capnocytophaga canimorsus meningitis diagnosed using next- generation sequencing of microbial cell-free DNA
Abuzar A Asif1, Moni Roy1, Benjamin R Tellier2
1Department of Internal Medicine, University of Illinois College of Medicine, Peoria, OSF Saint Francis Medical Center, 530 NE Glen Oak Ave, Peoria, IL 61637, USA.
Abstract:
Capnocytophaga canimorsus meningitis is frequently caused by exposure to dog or cat bites and occurs more commonly in immunocompromised individuals. CSF analysis is the first step in diagnosis; however, in situations where CSF cultures turn negative, molecular techniques such as 16S rRNA gene amplification followed by polymerase chain reaction (PCR) product sequencing have shown promise. Next generation sequencing of cell free DNA (NGS cfDNA) can assist in identifying the causative agent in a quick and accurate manner. We present a rare case of C. canimorsus meningitis in an immunocompetent host that highlights the utility of NGS cfDNA in timely diagnosis after exhausting all other available diagnostic techniques.
Insights
Capnocytophaga canimorsus meningitis, often from animal bites, can be diagnosed with next-generation sequencing of cell-free DNA (NGS cfDNA). This technique proved crucial for a rare immunocompetent patient when other tests failed.
Area of Science:
- Infectious Diseases
- Neurology
- Genomics
Background:
- Capnocytophaga canimorsus meningitis is typically linked to animal bites and primarily affects immunocompromised individuals.
- Cerebrospinal fluid (CSF) analysis is the initial diagnostic step, but conventional cultures can be negative.
- Molecular methods like 16S rRNA gene sequencing offer alternatives when standard cultures are uninformative.
Observation:
- A rare case of Capnocytophaga canimorsus meningitis occurred in an immunocompetent host.
- Standard diagnostic methods, including CSF culture, were exhausted without a definitive diagnosis.
- Next-generation sequencing of cell-free DNA (NGS cfDNA) was employed as a final diagnostic measure.
Findings:
- NGS cfDNA successfully identified Capnocytophaga canimorsus as the causative agent.
- This molecular technique provided a rapid and accurate diagnosis.
- The case demonstrated the effectiveness of NGS cfDNA in challenging meningitis cases.
Implications:
- NGS cfDNA is a valuable tool for diagnosing rare or difficult-to-detect meningitis cases.
- This technology can expedite diagnosis when conventional methods are insufficient.
- The findings support the broader application of NGS cfDNA in clinical microbiology and infectious disease diagnostics.
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