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Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology
Yulia Kargapolova1,2, Rizwan Rehimi3,4, Hülya Kayserili5
1Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany. ykargapo@uni-koeln.de.
Abstract:
Members of the chromodomain-helicase-DNA binding (CHD) protein family are chromatin remodelers implicated in human pathologies, with CHD6 being one of its least studied members. We discovered a de novo CHD6 missense mutation in a patient clinically presenting the rare Hallermann-Streiff syndrome (HSS). We used genome editing to generate isogenic iPSC lines and model HSS in relevant cell types. By combining genomics with functional in vivo and in vitro assays, we show that CHD6 binds a cohort of autophagy and stress response genes across cell types. The HSS mutation affects CHD6 protein folding and impairs its ability to recruit co-remodelers in response to DNA damage or autophagy stimulation. This leads to accumulation of DNA damage burden and senescence-like phenotypes. We therefore uncovered a molecular mechanism explaining HSS onset via chromatin control of autophagic flux and genotoxic stress surveillance.
Insights
A novel chromodomain-helicase-DNA binding protein 6 (CHD6) mutation causes Hallermann-Streiff syndrome (HSS). This mutation disrupts DNA repair and autophagy, leading to cellular damage and disease.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Chromodomain-helicase-DNA binding (CHD) proteins are crucial chromatin remodelers involved in various human diseases.
- CHD6 is a less-understood member of the CHD protein family, with its role in pathology largely unexplored.
Purpose of the Study:
- To investigate the role of CHD6 in the rare Hallermann-Streiff syndrome (HSS).
- To elucidate the molecular mechanisms by which a CHD6 mutation leads to HSS pathogenesis.
Main Methods:
- Genome editing was employed to create isogenic induced pluripotent stem cell (iPSC) lines modeling HSS.
- Genomic, in vivo, and in vitro assays were utilized to analyze CHD6 function.
- The study examined CHD6's interaction with autophagy and stress response genes.
Main Results:
- A de novo CHD6 missense mutation was identified in an HSS patient.
- The identified HSS mutation impairs CHD6 protein folding and its recruitment of co-remodelers.
- Cells with the mutation showed impaired DNA damage repair and autophagy, leading to increased DNA damage and senescence.
Conclusions:
- The study uncovers a molecular mechanism linking HSS to impaired chromatin remodeling by CHD6.
- Disruption of autophagic flux and genotoxic stress surveillance by mutated CHD6 contributes to HSS development.
- This research highlights CHD6's critical role in maintaining genomic stability and cellular homeostasis.
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