Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Methods of Documentation II: POMR01:26

Methods of Documentation II: POMR

1.2K
The Problem-Oriented Medical Record (POMR) revolutionized medical record-keeping by introducing a systematic approach focusing on the patient's problems rather than merely listing symptoms. Dr. Lawrence Weed's introduction of this method in the 1960s marked a significant advancement in medical documentation. The POMR framework consists of four key components: the database, problem list, plan of care, and progress notes.
1.2K
Upsampling01:22

Upsampling

378
Managing signal sampling rates is essential in digital signal processing to maintain signal integrity. A decimated signal, characterized by a reduced frequency range due to its lower sampling rate, can be upsampled by inserting zeros between each sample. This upsampling process expands the original spectrum and introduces repeated spectral replicas at intervals dictated by the new Nyquist frequency. To refine this zero-inserted sequence, it is passed through a lowpass filter with a cutoff...
378
Amplifying Signals via Enzymatic Cascade01:22

Amplifying Signals via Enzymatic Cascade

14.7K
When a ligand binds to a cell-surface receptor, the receptor's intracellular domain changes shape, which may either activate its enzyme function or allow its binding to other molecules. The initial signal is amplified by most signal transduction pathways. This means that a single ligand molecule can activate multiple molecules of a downstream target. Proteins that relay a signal are most commonly phosphorylated at one or more sites, activating or inactivating the protein. Kinases catalyze...
14.7K
Improving Translational Accuracy02:07

Improving Translational Accuracy

3.2K
3.2K
Improving Translational Accuracy02:07

Improving Translational Accuracy

12.1K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
12.1K
Pulse amplitude and quality01:17

Pulse amplitude and quality

2.5K
Pulse amplitude is a crucial indicator of cardiac health because it provides valuable insights into the strength of left ventricular contractions and the overall uniformity of blood circulation within the vasculature. The strength of the pulse is directly related to the force with which the heart contracts and the volume of blood being pumped.
A weak or absent pulse may indicate reduced cardiac output or poor left ventricular contraction, which can be signs of cardiovascular dysfunction or...
2.5K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

DataSHIELD: mitigating disclosure risk in a multi-site federated analysis platform.

Bioinformatics advances·2025
Same author

MOLGENIS Armadillo: a lightweight server for federated analysis using DataSHIELD.

Bioinformatics (Oxford, England)·2024
Same author

Federated privacy-protected meta- and mega-omics data analysis in multi-center studies with a fully open-source analytic platform.

PLoS computational biology·2024
Same author

Creating a learning health system to include environmental determinants of health: The GroundsWell experience.

Learning health systems·2024
Same author

Visualization and exploration of linked data using virtual reality.

Database : the journal of biological databases and curation·2024
Same author

Reconciling the biomedical data commons and the GDPR: three lessons from the EUCAN ELSI collaboratory.

European journal of human genetics : EJHG·2023

Related Experiment Video

Updated: Nov 4, 2025

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness
03:14

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness

Published on: December 6, 2024

809

PUblications Metadata Augmentation (PUMA) pipeline.

Oliver W Butters1,2,3, Rebecca C Wilson1,2,3, Hugh Garner2,3

  • 1Department of Public Health, Policy and Systems, University of Liverpool, Liverpool, UK.

F1000Research
|May 26, 2021
PubMed
Summary
This summary is machine-generated.

This study introduces a software pipeline to enhance cohort study publication lists with rich metadata. This improves data accessibility and enables bibliometric analysis for better research impact assessment.

Keywords:
ALSPACBibliographyBibliometricsLongitudinal birth cohort

More Related Videos

The MPLEx Protocol for Multi-omic Analyses of Soil Samples
10:12

The MPLEx Protocol for Multi-omic Analyses of Soil Samples

Published on: May 30, 2018

11.3K
Quantifying X-Ray Fluorescence Data Using MAPS
14:58

Quantifying X-Ray Fluorescence Data Using MAPS

Published on: February 17, 2018

11.0K

Related Experiment Videos

Last Updated: Nov 4, 2025

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness
03:14

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness

Published on: December 6, 2024

809
The MPLEx Protocol for Multi-omic Analyses of Soil Samples
10:12

The MPLEx Protocol for Multi-omic Analyses of Soil Samples

Published on: May 30, 2018

11.3K
Quantifying X-Ray Fluorescence Data Using MAPS
14:58

Quantifying X-Ray Fluorescence Data Using MAPS

Published on: February 17, 2018

11.0K

Area of Science:

  • Biomedical Informatics
  • Bibliometrics
  • Data Science

Background:

  • Cohort studies generate extensive publications over long durations.
  • Current publication lists lack robust search and metadata for analysis.
  • This hinders new users from accessing and evaluating study data.

Purpose of the Study:

  • To develop a software pipeline for aggregating and enriching publication metadata.
  • To create a web-based tool for searching and exploring cohort study publications.
  • To facilitate bibliometric analysis and impact assessment of cohort studies.

Main Methods:

  • Aggregating metadata from third-party providers.
  • Incorporating geocoding of first authors and citation counts.
  • Developing a web-based search and exploration interface.

Main Results:

  • Enriched publication metadata including author locations and citation data.
  • A searchable database of cohort study publications.
  • Demonstrated utility with an exemplar cohort study publication list.

Conclusions:

  • The pipeline enhances the discoverability and utility of cohort study publications.
  • Enriched metadata supports impact metrics, public dissemination, and bibliometric analysis.
  • This tool lowers barriers for data users and facilitates scientific study.