A Fully Natural Gradient Scheme for Improving Inference of the Heterogeneous Multioutput Gaussian Process Model
Summary
This study introduces a novel optimization scheme for multioutput Gaussian processes, enhancing performance for heterogeneous data. The natural gradient optimization improves results over adaptive methods for both LMC and convolution models.
Area of Science:
- Machine Learning
- Statistical Modeling
- Computational Statistics
Background:
- Multioutput Gaussian processes (GPs) are extended to model heterogeneous outputs using individual likelihood functions.
- A vector-valued GP prior with a linear model of coregionalization (LMC) covariance jointly models likelihood parameters as latent functions.
- Stochastic variational inference (SVI) is enabled via an inducing points' framework, yielding tractable variational bounds.
Purpose of the Study:
- To address optimization challenges in heterogeneous multioutput GP models, specifically the conditioning issues with adaptive gradient methods.
- To introduce a novel natural gradient (NG) optimization scheme using an exploratory distribution over hyperparameters.
- To extend the heterogeneous multioutput model with latent functions from convolution processes and optimize it using NG.
Main Methods:
- Developed a natural gradient (NG) optimization scheme by introducing an exploratory distribution over hyperparameters for joint inference.
- Extended the heterogeneous multioutput GP model to incorporate convolution processes for latent functions.
- Applied SVI to the convolutional model for scalability and optimized it using the proposed NG scheme.
Main Results:
- The NG optimization scheme achieved superior local optima and higher test performance rates compared to adaptive gradient methods for both LMC and convolution process models.
- Demonstrated the scalability of the convolutional GP model through SVI.
- Showcased the effectiveness of the NG optimization for the scalable convolutional model.
Conclusions:
- The proposed natural gradient optimization scheme significantly improves performance and stability for heterogeneous multioutput Gaussian processes.
- Convolution processes offer a flexible alternative for latent function modeling in heterogeneous multioutput GPs.
- The developed methods provide efficient and scalable solutions for complex multioutput GP modeling and inference.
Related Concept Videos
Multi-input and Multi-variable systems
222
Cruise control systems in cars are designed as multi-input systems to maintain a driver's desired speed while compensating for external disturbances such as changes in terrain. The block diagram for a cruise control system typically includes two main inputs: the desired speed set by the driver and any external disturbances, such as the incline of the road. By adjusting the engine throttle, the system maintains the vehicle's speed as close to the desired value as possible.
In the absence of...
In the absence of...
222
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation
854
This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
On...
854
Improving Translational Accuracy
12.1K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
12.1K
Improving Translational Accuracy
3.2K
3.2K
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models
152
Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
152
Parameters Affecting Nonlinear Elimination: Zero-Order Input, First-Order Absorption and Two-Compartment Model
164
Drugs administered through various routes can lead to nonlinear elimination, resulting in complex pharmacokinetic behaviors crucial to understanding efficacious drug dosing.
When a drug is administered through a constant intravenous infusion and eliminated via nonlinear pharmacokinetics, it follows zero-order input. For example, oral drugs undergo first-order absorption upon administration and are eliminated through nonlinear pharmacokinetics.
In the case of subcutaneously administered drugs,...
When a drug is administered through a constant intravenous infusion and eliminated via nonlinear pharmacokinetics, it follows zero-order input. For example, oral drugs undergo first-order absorption upon administration and are eliminated through nonlinear pharmacokinetics.
In the case of subcutaneously administered drugs,...
164
