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Space-Filling Curves for Real-Space Electronic Structure Calculations
Kai-Hsin Liou1, Ariel Biller2, Leeor Kronik2
1McKetta Department of Chemical Engineering, University of Texas at Austin, Austin TX 78712, United States.
This study introduces Hilbert space-filling curves (SFCs) for efficient parallel sparse matrix-vector multiplication in large-scale electronic structure calculations. The method enhances computational performance for Kohn-Sham calculations, enabling studies of larger systems like silicon nanocrystals.
Area of Science:
- Computational Physics
- Materials Science
- High-Performance Computing
Background:
- Kohn-Sham calculations often involve large, sparse Hamiltonian matrices.
- Iterative eigensolvers require numerous matrix-vector multiplications, demanding efficient parallel algorithms.
- Real-space implementations face challenges with large matrix sizes and sparsity.
Purpose of the Study:
- To develop an efficient parallel sparse matrix-vector multiplication algorithm for large-scale Kohn-Sham calculations.
- To investigate the benefits of Hilbert space-filling curves (SFCs) for domain partitioning in real-space electronic structure methods.
- To improve the scalability and performance of iterative eigensolvers.
Main Methods:
- Utilizing Hilbert space-filling curves (SFCs) for grid-point partitioning to enhance data locality and communication balance.
- Implementing blockwise operations with SFCs to leverage vector-processing units on modern hardware.
- Applying the Chebyshev-filtered subspace iteration method for solving the Kohn-Sham equations.
Main Results:
- Hilbert SFCs improve locality, balance communication, and reduce overhead in parallel sparse matrix-vector multiplication.
- Blockwise operations coupled with SFCs exploit vectorization for speedup.
- Demonstrated scalability and speedup for solving Kohn-Sham equations for large silicon nanocrystals (up to 26,000 atoms).
Conclusions:
- Blockwise Hilbert SFCs offer a significant performance improvement for large-scale electronic structure calculations.
- The method enables the simulation of complex systems, revealing insights into material properties like the density of states.
- This approach advances the computational feasibility of studying quantum mechanical systems.
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