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Updated: Nov 2, 2025

Identifying Caspases and their Motifs that Cleave Proteins During Influenza A Virus Infection
Published on: July 21, 2022
Mammalian cells use the autophagy process to restrict avian influenza virus replication
Siwen Liu1, Bobo Wing-Yee Mok1, Shaofeng Deng1
1State Key Laboratory for Emerging Infectious Diseases, InnoHK Centre for Virology, Vaccinology, and Therapeutics, and Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
Abstract:
Host adaptive mutations in the influenza A virus (IAV) PB2 protein are critical for human infection, but their molecular action is not well understood. We observe that when IAV containing avian PB2 infects mammalian cells, viral ribonucleoprotein (vRNP) aggregates that localize to the microtubule-organizing center (MTOC) are formed. These vRNP aggregates resemble LC3B-associated autophagosome structures, with aggresome-like properties, in that they cause the re-distribution of vimentin. However, electron microscopy reveals that these aggregates represent an accumulation of autophagic vacuoles. Compared to mammalian-PB2 virus, avian-PB2 virus induces higher autophagic flux in infected cells, indicating an increased rate of autophagosomes containing avian vRNPs fusing with lysosomes. We found that p62 is essential for the formation of vRNP aggregates and that the Raptor-interacting region of p62 is required for interaction with vRNPs through the PB2 polymerase subunit. Selective autophagic sequestration during late-stage virus replication is thus an additional strategy for host restriction of avian-PB2 IAV.
Insights
Avian influenza A virus (IAV) with avian PB2 proteins forms aggregates in mammalian cells. This selective autophagy mechanism restricts avian-IAV replication, impacting host adaptation.
Area of Science:
- Virology
- Cell Biology
- Immunology
Background:
- Host adaptive mutations in influenza A virus (IAV) PB2 protein are crucial for human infection.
- The precise molecular mechanisms by which PB2 facilitates host adaptation remain incompletely understood.
- IAV PB2 protein plays a significant role in viral replication and host range determination.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying host restriction of avian-IAV in mammalian cells.
- To investigate the role of PB2 protein in viral ribonucleoprotein (vRNP) aggregation and cellular responses.
- To determine the contribution of autophagy to the host restriction of avian-PB2 IAV.
Main Methods:
- Observation of vRNP aggregation in mammalian cells infected with avian-PB2 IAV.
- Analysis of vRNP aggregates using electron microscopy and immunofluorescence.
- Assessment of autophagic flux and p62-mediated vRNP sequestration.
Main Results:
- Avian-PB2 IAV infection induces vRNP aggregation at the microtubule-organizing center (MTOC) in mammalian cells.
- These aggregates exhibit aggresome-like properties and are associated with autophagic vacuoles.
- Avian-PB2 IAV increases autophagic flux, and p62 is essential for vRNP aggregate formation via interaction with PB2.
Conclusions:
- Selective autophagic sequestration of vRNPs is a host restriction strategy against avian-PB2 IAV.
- The PB2 protein's interaction with p62 mediates vRNP sequestration into autophagosomes.
- This mechanism contributes to limiting avian-IAV replication in mammalian hosts.
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