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Updated: Nov 2, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Autoimmunity and COVID-19 - The microbiotal connection
Nurit Katz-Agranov1, Gisele Zandman-Goddard2
1Department of Medicine, Saint Elizabeth's Medical Center, Boston, MA, USA; Tufts University School of Medicine, Boston, MA, USA.
COVID-19 patients exhibit gut microbiome alterations similar to lupus, characterized by reduced diversity and increased pathobionts. Targeting the gut microbiome may offer novel therapeutic strategies for COVID-19 management.
Area of Science:
- Microbiology
- Immunology
- Gastroenterology
Background:
- The novel SARS-CoV-2 virus causes COVID-19, presenting a wide spectrum of disease severity.
- Gastrointestinal (GI) manifestations and the gut microbiome's role in immunity are increasingly recognized in COVID-19.
- Investigating the gut microbiome in COVID-19 may reveal links to autoimmune diseases like lupus.
Purpose of the Study:
- To review and connect data on the gut microbiome, GI tract, and COVID-19.
- To investigate similarities between gut microbiome alterations in COVID-19 and lupus patients.
- To explore potential therapeutic strategies targeting the gut microbiota for COVID-19.
Main Methods:
- Extensive literature review using PubMed and Google Scholar.
- Searched for terms: microbiome, dysbiosis, COVID-19, SARS-CoV-2, gastrointestinal, lupus, autoimmune.
- Compared findings from COVID-19 microbiome studies with those from lupus microbiome studies.
Main Results:
- Similar immune dysregulation processes observed in COVID-19 and lupus patients.
- Shared alterations include reduced microbiota biodiversity and increased pathobionts (e.g., Proteobacteria).
- A decrease in beneficial symbionts (e.g., Lactobacillus) and compromised intestinal barrier integrity were noted in both conditions.
Conclusions:
- The GI tract plays a role in COVID-19 manifestations, but causality of dysbiosis is debated.
- Similarities in gut microbiome profiles between COVID-19 and lupus suggest shared underlying mechanisms.
- Microbiome manipulation (e.g., nutritional supplements, fecal transplants) may offer low-risk, low-cost therapeutic avenues for COVID-19.
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