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Updated: Nov 1, 2025

Applying Cheminformatics to Develop a Structure Searchable Database of Analytical Methods
Published on: June 6, 2025
Progress on open chemoinformatic tools for expanding and exploring the chemical space
José L Medina-Franco1, Norberto Sánchez-Cruz2, Edgar López-López2,3
1DIFACQUIM Research Group, Department of Pharmacy, School of Chemistry, Universidad Nacional Autónoma de México, 04510, Mexico City, Mexico. medinajl@unam.mx.
Chemoinformatics tools help expand and visualize chemical space, aiding drug discovery by exploring structure-property relationships. Open-source resources offer valuable advantages for research and education.
Area of Science:
- Chemoinformatics
- Computational Chemistry
- Drug Discovery
Background:
- Chemical space is fundamental to chemoinformatics and computational chemistry.
- Understanding chemical space is crucial for structure-property relationship (SPR) studies.
- Molecular representation significantly influences chemical space characterization.
Purpose of the Study:
- To review recent advancements in chemoinformatics tools for chemical space exploration.
- To highlight methods for expanding, characterizing, and visualizing chemical space.
- To focus on tools applicable to drug discovery and SPR analysis.
Main Methods:
- Discussion of chemoinformatics tools and techniques.
- Analysis of various molecular representations.
- Emphasis on freely available and user-friendly software.
Main Results:
- Development of tools to expand and characterize chemical space.
- Generation of visual representations for chemical spaces.
- Exploration of SPRs within defined chemical spaces.
Conclusions:
- Freely available chemoinformatics tools facilitate chemical space exploration and drug discovery.
- Open resources provide significant benefits for scientific research, education, and dissemination.
- Effective use of molecular representations is key to leveraging chemical space effectively.
Related Concept Videos
Drug Discovery: Overview
Molecular Models
Experimental Determination of Chemical Formula
Development of Analytical Methods

