Pseudogenes: Four Decades of Discovery
1Department of Pharmacology and Toxicology, University of Toronto and Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada. leonardo.salmena@utoronto.ca.
Methods in Molecular Biology (Clifton, N.J.)
|June 24, 2021
Summary
Pseudogenes, once thought to be non-functional DNA, are now understood to be expressed as functional long noncoding RNAs (lncRNAs). Emerging research reveals their significant roles in human biology and disease.
Area of Science:
- Genomics
- Molecular Biology
- Genetics
Background:
- Pseudogenes are genomic sequences resembling functional genes, with ~12,000-20,000 in the human genome.
- Historically considered non-functional 'junk DNA' or genetic fossils.
- Recent findings show many pseudogenes are transcribed into RNA, challenging their 'functionless' status.
Discussion:
- Emerging evidence suggests expressed pseudogene transcripts possess biological functions.
- These functional pseudogenes can be classified as a subclass of long noncoding RNAs (lncRNAs).
- Their roles in human biology and disease are increasingly being investigated.
Key Insights:
- Pseudogenes are not merely evolutionary relics but can be active participants in cellular processes.
- Expressed pseudogenes represent a novel class of functional lncRNAs.
- Understanding pseudogene function is crucial for advancing human biology and disease research.
Outlook:
- This work highlights new methodologies for pseudogene research.
- Further investigation into the functional repertoire of pseudogenes is warranted.
- The field is rapidly evolving, revealing the extent of pseudogene biological functions.
Related Concept Videos
Gene Duplication and Divergence
7.3K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
7.3K
Exon Recombination
3.8K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.8K
Cancer-Critical Genes I: Proto-oncogenes
9.5K
Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
9.5K
Genome Size and the Evolution of New Genes
8.6K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
8.6K
Genome Size and the Evolution of New Genes
2.8K
2.8K
Synthetic Biology
5.1K
Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
Golden rice
Golden rice is a genetically modified...
5.1K


