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Updated: Oct 28, 2025

Combined Immunofluorescence and DNA FISH on 3D-preserved Interphase Nuclei to Study Changes in 3D Nuclear Organization
Published on: February 3, 2013
Optimal linkage disequilibrium splitting
1National Centre for Register-Based Research, Aarhus University, Aarhus 8210, Denmark.
Motivation:
A few algorithms have been developed for splitting the genome in nearly independent blocks of linkage disequilibrium. Due to the complexity of this problem, these algorithms rely on heuristics, which makes them suboptimal.
Results:
Here, we develop an optimal solution for this problem using dynamic programming.
Availability:
This is now implemented as function snp_ldsplit as part of R package bigsnpr.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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