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Measurement of Heme Synthesis Levels in Mammalian Cells
Published on: July 9, 2015
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Methemoglobin formation in mutant hemoglobin α chains: electron transfer parameters and rates
Vaibhav A Dixit1, Jochen Blumberger2, Shivam Kumar Vyas1
1Department of Pharmacy, Birla Institute of Technology and Sciences Pilani (BITS-Pilani), Rajasthan, India.
Biophysical Journal
|July 15, 2021
Summary
Protein mutations can cause methemoglobinemia by stabilizing the oxidized heme state. Molecular dynamics simulations reveal how mutations affect hemoglobin (Hb) oxidation and reduction rates, aiding in identifying disease-causing variants.
Area of Science:
- Biophysics
- Computational Chemistry
- Molecular Biology
Background:
- Hemoglobin's dioxygen transport relies on stable reduced heme (Fe2+).
- Mutations can stabilize oxidized heme (Fe3+), leading to methemoglobinemia, a potentially lethal condition.
- Previous studies primarily analyzed inner-sphere heme mutations.
Purpose of the Study:
- To investigate the impact of mutations on hemoglobin (Hb) oxidation and reduction rates using all-atom molecular dynamics simulations.
- To calculate Marcus electron transfer (ET) parameters for Hb wild-type (WT) and Hb M variants.
- To provide a mechanistic understanding of how mutations affect Hb stability and redox properties.
Main Methods:
- All-atom molecular dynamics simulations of Hb WT and α chain variants in both redox states.
- Calculation of Marcus electron transfer (ET) parameters.
- Analysis of heme-solvent hydrogen bonding interactions.
Main Results:
- Most Hb WT and α chain variants maintained globin structure, except Hb M Iwate (H87Y).
- Hb M variants exhibited lower redox potentials, stabilizing the Fe3+ state, notably Hb Miyagi (K61E).
- Solvent reorganization significantly contributed to free energy; protein reorganization varied, with Miyagi and J-Buda showing minimal contribution.
- Lys61 residue plays a role in stabilizing the Fe2+ state through heme-solvent H-bonding.
Conclusions:
- The developed methodology accurately predicts electron transfer rates and provides insights into mutation effects on Hb structure, stability, and redox properties.
- This approach can identify mutations leading to methemoglobinemia.
- Understanding these mechanisms is crucial for diagnosing and potentially treating methemoglobinemia.
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