Related Experiment Video
Updated: Oct 27, 2025

Digital PCR-based Competitive Index for High-throughput Analysis of Fitness in Salmonella
Published on: May 13, 2019
Effect of multiple, compatible plasmids on the fitness of the bacterial host by inducing transcriptional changes
1Department of Microbiology, Sungkyunkwan University School of Medicine, Suwon 16419, Republic of Korea.
Objectives:
Bacteria that acquire plasmids incur a biological cost. Despite this fact, clinical Enterobacteriaceae isolates commonly contain multiple co-existing plasmids harbouring carbapenemase genes.
Methods:
Six different plasmids carrying blaNDM-1, blaNDM-5, blaCTX-M-15, blaKPC-2, blaOXA-181 and blaOXA-232 genes were obtained from Klebsiella pneumoniae and Escherichia coli clinical isolates. Using the E. coli DH5α strain as recipient, 14 transconjugants with diverse plasmid combinations (single or double plasmids) were generated. For each of these, the effects of plasmid carriage on the bacterial host were investigated using in vitro and in vivo competition assays; additionally, the effects were investigated in the context of biofilm formation, serum resistance and survival inside macrophages. Transcriptomic changes in single- and double-plasmid recipients were also investigated.
Results:
Increased in vitro and in vivo competitiveness was observed when two plasmids carrying blaNDM-1 and blaOXA-232 were co-introduced into the host bacteria. However, DH5α::pNDM5 + pOXA232 and other double-plasmid recipients did not show such competitiveness. DH5α::pNDM5 + pOXA181 did not show any fitness cost compared with a plasmid-free host and single-plasmid transconjugants, while both the double-plasmid recipients with pCTXM15 or pKPC2 exhibited a fitness burden. The double-plasmid recipient DH5α::pNDM1 + pOXA232 also exhibited increased biofilm formation, serum resistance and survival inside macrophages. Transcriptomic analysis revealed that the genes of DH5α::pNDM1 + pOXA232 involved in metabolic pathways, transport and stress response were up-regulated, while those involved in translation were down-regulated.
Conclusions:
Our study suggests that bacterial strains can gain fitness through the acquisition of multiple plasmids harbouring antibiotic resistance genes, which may be mediated by transcriptomic changes in the chromosomal genes of the bacterial host.
Insights
Acquiring multiple antibiotic resistance plasmids can surprisingly boost bacterial fitness. This occurs through transcriptomic changes, enhancing survival and competitiveness in host bacteria.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Bacteria often carry plasmids conferring antibiotic resistance, despite a biological cost.
- Clinical isolates of Enterobacteriaceae frequently harbor multiple plasmids with carbapenemase genes.
Purpose of the Study:
- To investigate the fitness effects of co-introducing multiple antibiotic resistance plasmids into bacterial hosts.
- To explore the impact of plasmid combinations on bacterial competitiveness, biofilm formation, serum resistance, and macrophage survival.
- To analyze transcriptomic changes associated with multi-plasmid carriage.
Main Methods:
- Generated 14 transconjugants of E. coli DH5α with single or double plasmids carrying various carbapenemase genes (blaNDM-1, blaNDM-5, blaCTX-M-15, blaKPC-2, blaOXA-181, blaOXA-232).
- Assessed bacterial fitness using in vitro and in vivo competition assays.
- Evaluated biofilm formation, serum resistance, and intracellular survival within macrophages.
- Performed transcriptomic analysis to identify changes in gene expression.
Main Results:
- Co-introduction of plasmids carrying blaNDM-1 and blaOXA-232 enhanced bacterial competitiveness, biofilm formation, serum resistance, and macrophage survival.
- Some double-plasmid combinations (e.g., pNDM5+pOXA232, pNDM5+pOXA181) did not confer increased competitiveness or even exhibited a fitness burden.
- Transcriptomic analysis of the enhanced strain (DH5α::pNDM1+pOXA232) revealed upregulation of metabolic, transport, and stress response genes, and downregulation of translation-related genes.
Conclusions:
- Bacterial strains can gain fitness advantages from acquiring multiple antibiotic resistance plasmids.
- These fitness gains are potentially mediated by transcriptomic alterations in the bacterial host's chromosomal genes.
- Understanding these mechanisms is crucial for combating the spread of antibiotic resistance.
Related Concept Videos
Plasmids
Bacterial Transformation
Griffith made an unexpected discovery when he killed the pathogenic strain and mixed its remains with the live, non-pathogenic strain. Not only did the mixture kill host mice, but it also contained living pathogenic bacteria that...
Coordination of Gene Expression Processes in Bacteria
Transduction
Antibiotic Selection
Stringent Response in E. coli

