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Updated: Oct 27, 2025

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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
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Hyperprolinemia type I caused by homozygous p.T466M mutation in PRODH
Rina Hama1, Jun Kido2,3, Keishin Sugawara4
1Department of Pediatrics, Kumamoto University Hospital, Kumamoto, Japan.
Human Genome Variation
|July 21, 2021
Summary
This study details a patient with Hyperprolinemia type I (HPI), a metabolic disorder linked to proline oxidase deficiency. The patient exhibited short stature and mild intellectual disability, associated with a specific PRODH gene mutation.
Area of Science:
- Biochemistry
- Genetics
- Metabolic Disorders
Background:
- Hyperprolinemia type I (HPI) is an inherited metabolic disorder.
- It results from defects in the proline oxidase enzyme, encoded by the PRODH gene.
- HPI is typically inherited in an autosomal recessive pattern.
Purpose of the Study:
- To report a clinical case of Hyperprolinemia type I.
- To identify the specific genetic mutation and polymorphisms associated with the patient's HPI.
- To correlate the clinical presentation with the identified genetic findings.
Main Methods:
- Plasma amino acid analysis was performed to detect elevated proline levels.
- Sanger sequencing was used to identify mutations and polymorphisms in the PRODH gene.
- Clinical evaluation included assessment of physical growth and cognitive function.
Main Results:
- The patient was diagnosed with Hyperprolinemia type I.
- A specific mutation, NM_016335.4 (PRODH_v001):c.1397C>T (p.T466M), and PRODH gene polymorphisms were identified.
- Clinical manifestations included short stature, preference for carbohydrate-rich foods, and mild intellectual disability.
Conclusions:
- The identified PRODH gene mutation and polymorphisms are associated with Hyperprolinemia type I in this patient.
- The clinical phenotype, including neurodevelopmental features, aligns with HPI.
- This case highlights the importance of genetic analysis in diagnosing and understanding metabolic disorders.
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