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Updated: Oct 27, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Genomic insights into methicillin-resistant Staphylococcus pseudintermedius isolates from dogs and humans of the same
Nathita Phumthanakorn1,2,3, Sybille Schwendener2, Valentina Donà2
1Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
Abstract:
Methicillin-resistant Staphylococcus pseudintermedius (MRSP) is an important opportunistic pathogenic bacterium of dogs that also occasionally colonize and infect humans. However, whether MRSP can adapt to human hosts is not clear and whole genome sequences of MRSP from humans are still limited. Genomic comparative analyses of 3 couples of isolates from dogs (n = 3) and humans (n = 3) belonging to ST45, ST112, and ST181, the dominant clones in Thailand were conducted to determine the degree of similarities between human and animal MRSP of a same ST. Among eight prophages, three prophages associated with the leucocidins genes (lukF/S-I), φVB88-Pro1, φVB16-Pro1 and φAP20-Pro1, were distributed in the human MRSPs, while their remnants, φAH18-Pro1, were located in the dog MRSPs. A novel composite pathogenicity island, named SpPI-181, containing two integrase genes was identified in the ST181 isolates. The distribution of the integrase genes of the eight prophages and SpPI-181 was also analysed by PCR in 77 additional MRSP isolates belonging to different STs. The PCR screen revealed diversity in prophage carriage, especially in ST45 isolates. Prophage φAK9-Pro1 was only observed in ST112 isolates from dogs and SpPI-181 was found associated with ST181 clonal lineage. Among the 3 couple of isolates, ST45 strains showed the highest number of single nucleotide polymorphisms (SNP) in their core genomes (3,612 SNPs). The genomic diversity of ST45 isolates suggested a high level of adaptation that may lead to different host colonization of successful clones. This finding provided data on the genomic differences of MRSP associated with colonization and adaption to different hosts.
Insights
Genomic analysis reveals Methicillin-resistant Staphylococcus pseudintermedius (MRSP) from dogs and humans share similarities but exhibit distinct adaptations. ST45 MRSP strains show high genomic diversity, suggesting successful host adaptation.
Area of Science:
- Veterinary Microbiology
- Genomics
- Zoonotic Diseases
Background:
- Methicillin-resistant Staphylococcus pseudintermedius (MRSP) is a significant opportunistic pathogen in dogs, with occasional human infections.
- Understanding MRSP adaptation to human hosts is crucial, yet whole genome data from human isolates remain limited.
Purpose of the Study:
- To compare the genomes of MRSP isolates from dogs and humans within the same sequence types (STs).
- To investigate genomic similarities and differences, including prophage and pathogenicity island content, between human and canine MRSP.
Main Methods:
- Comparative genomic analysis of three dog-human MRSP isolate pairs (ST45, ST112, ST181).
- Identification and characterization of prophages and pathogenicity islands.
- PCR screening for specific genetic elements in additional MRSP isolates.
- Analysis of single nucleotide polymorphisms (SNPs) in core genomes.
Main Results:
- Prophages associated with leucocidin genes were found in human MRSP, with remnants in dog MRSP.
- A novel pathogenicity island, SpPI-181, was identified in ST181 isolates.
- ST45 MRSP strains exhibited the highest core genome SNP count (3,612), indicating significant genomic diversity and potential for host adaptation.
Conclusions:
- MRSP isolates from dogs and humans display host-specific genomic features and varying degrees of adaptation.
- Genomic diversity in ST45 MRSP suggests successful adaptation and potential for broader host colonization.
- This study provides valuable genomic insights into MRSP host adaptation and zoonotic potential.
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