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Medical code prediction via capsule networks and ICD knowledge.

Weidong Bao1,2, Hongfei Lin2, Yijia Zhang3

  • 1School of Information Engineering, Dalian Ocean University, Dalian, China.

BMC Medical Informatics and Decision Making
|July 31, 2021
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Summary

A novel hybrid capsule network model improves automatic medical code assignment from clinical notes. This deep learning approach enhances efficiency and accuracy in electronic health records by effectively capturing features from long, complex documents.

Keywords:
Capsule networkClinical notesDomain knowledgeMedical code prediction

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Area of Science:

  • Medical Informatics
  • Artificial Intelligence
  • Natural Language Processing

Background:

  • Clinical notes are vital for patient health status documentation.
  • International Classification of Diseases (ICD) codes are crucial for electronic health records.
  • Current neural network methods struggle with the complexity and length of clinical notes for accurate code assignment.

Purpose of the Study:

  • To propose a hybrid capsule network model for automatic medical code assignment.
  • To improve the efficiency and accuracy of extracting features from lengthy clinical notes.
  • To leverage label information for enhanced medical code prediction.

Main Methods:

  • A hybrid capsule network model incorporating bi-directional Long Short-Term Memory (Bi-LSTM).
  • A label embedding framework to integrate text and label information.
  • A dynamic routing algorithm within the capsule network for feature extraction.

Main Results:

  • The model achieved a micro F1-score of 67.5% on the MIMIC-III dataset.
  • Outperformed existing state-of-the-art methods in automatic medical code assignment.
  • Demonstrated effective feature capture from complex clinical note texts.

Conclusions:

  • The proposed model effectively captures important features across sentences using dynamic routing and label embedding.
  • Capsule networks and domain knowledge are beneficial for medical code prediction.
  • The hybrid approach offers a significant advancement in automated medical coding.