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Updated: Oct 25, 2025

Evaluating Cell Death Using Cell-Free Supernatant of Probiotics in Three-Dimensional Spheroid Cultures of Colorectal Cancer Cells
Published on: June 13, 2020
Microbes exploit death-induced nutrient release by gut epithelial cells.
Christopher J Anderson1,2, Christopher B Medina3, Brady J Barron3
1VIB-UGent Center for Inflammation Research, Ghent, Belgium.
Gut bacteria, particularly Enterobacteriaceae, thrive on nutrients released from dying mammalian cells. This discovery reveals a new mechanism influencing gut health and disease.
Area of Science:
- Microbiology
- Cell Biology
- Gastroenterology
Background:
- Regulated cell death is crucial for organism homeostasis, and its dysregulation is linked to gastrointestinal pathologies.
- The relationship between cell death and gut diseases with microbial involvement is known, but the direct impact of dying cells on bacterial growth remains unclear.
Purpose of the Study:
- To investigate the direct effect of dying mammalian cells on the growth of gut bacteria.
- To elucidate the mechanisms by which bacteria exploit nutrients from apoptotic cells.
Main Methods:
- Utilized primary mouse colonic tissue, mouse and human cell lines, and various apoptotic triggers.
- Employed conventional and germ-free mice for in vivo studies.
- Analyzed transcriptional responses in Salmonella and identified key genes involved in colonization.
Main Results:
- Mammalian nutrients released during caspase-3/7-dependent apoptosis significantly enhance the growth of Enterobacteriaceae.
- Identified pyruvate formate-lyase (pflB) as a critical gene for bacterial colonization in models of foodborne infection, TNF/A20-dependent cell death, and chemotherapy-induced mucositis.
- Demonstrated that dying cell nutrients induce a core transcriptional response in pathogenic Salmonella.
Conclusions:
- Dying mammalian cells release nutrients that serve as a potent fuel source for intestinal bacteria, particularly Enterobacteriaceae.
- This host-pathogen interaction provides a new perspective on gut inflammation and the impact of treatments like cytotoxic chemotherapy.
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