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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Synthetic Lethality Screening Highlights Colorectal Cancer Vulnerability to Concomitant Blockade of NEDD8 and EGFR
Federica Invrea1,2, Simona Punzi1, Consalvo Petti1
1Candiolo Cancer Institute, FPO-IRCCS, 10060 Candiolo, Italy.
Abstract:
Colorectal cancer (CRC) is a heterogeneous disease showing significant variability in clinical aggressiveness. Primary and acquired resistance limits the efficacy of available treatments, and identification of effective drug combinations is needed to further improve patients' outcomes. We previously found that the NEDD8-activating enzyme inhibitor pevonedistat induced tumor stabilization in preclinical models of poorly differentiated, clinically aggressive CRC resistant to available therapies. To identify drugs that can be effectively combined with pevonedistat, we performed a "drop-out" loss-of-function synthetic lethality screening with an shRNA library covering 200 drug-target genes in four different CRC cell lines. Multiple screening hits were found to be involved in the EGFR signaling pathway, suggesting that, rather than inhibition of a specific gene, interference with the EGFR pathway at any level could be effectively leveraged for combination therapies based on pevonedistat. Exploiting both BRAF-mutant and RAS/RAF wild-type CRC models, we validated the therapeutic relevance of our findings by showing that combined blockade of NEDD8 and EGFR pathways led to increased growth arrest and apoptosis both in vitro and in vivo. Pathway modulation analysis showed that compensatory feedback loops induced by single treatments were blunted by the combinations. These results unveil possible therapeutic opportunities in specific CRC clinical settings.
Insights
Combining NEDD8 and EGFR pathway inhibition shows promise for treating aggressive colorectal cancer (CRC). This combination therapy enhances growth arrest and apoptosis, offering new therapeutic avenues for patients with resistant CRC.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Colorectal cancer (CRC) is a heterogeneous disease with variable clinical aggressiveness.
- Treatment resistance limits the efficacy of current therapies, necessitating novel drug combinations.
- Pevonedistat, a NEDD8-activating enzyme inhibitor, previously stabilized tumors in aggressive CRC models.
Purpose of the Study:
- To identify effective drug combinations with pevonedistat for colorectal cancer.
- To investigate the potential of targeting the EGFR signaling pathway in combination with NEDD8 inhibition.
Main Methods:
- Conducted a synthetic lethality screen using an shRNA library targeting 200 drug-target genes in four CRC cell lines.
- Utilized BRAF-mutant and RAS/RAF wild-type CRC models for validation.
- Performed in vitro and in vivo experiments to assess combined pathway blockade.
Main Results:
- EGFR signaling pathway genes were identified as key hits in the drug-target screen.
- Combined blockade of NEDD8 and EGFR pathways significantly increased growth arrest and apoptosis.
- The combination therapy effectively blunted compensatory feedback loops observed with single treatments.
Conclusions:
- Interference with the EGFR pathway is a viable strategy for combination therapy with pevonedistat in CRC.
- Combined NEDD8 and EGFR pathway inhibition offers therapeutic opportunities for specific, aggressive CRC patient populations.
- This approach may overcome resistance mechanisms and improve patient outcomes in colorectal cancer.
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