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Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome
Published on: June 15, 2016
A hidden threshold in motor neuron gene networks revealed by modulation of miR-218 dose
Neal D Amin1, Gokhan Senturk1, Giancarlo Costaguta1
1Gene Expression Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
Abstract:
Disruption of homeostatic microRNA (miRNA) expression levels is known to cause human neuropathology. However, the gene regulatory and phenotypic effects of altering a miRNA's in vivo abundance (rather than its binary gain or loss) are not well understood. By genetic combination, we generated an allelic series of mice expressing varying levels of miR-218, a motor neuron-selective gene regulator associated with motor neuron disease. Titration of miR-218 cellular dose unexpectedly revealed complex, non-ratiometric target mRNA dose responses and distinct gene network outputs. A non-linearly responsive regulon exhibited a steep miR-218 dose-dependent threshold in repression that, when crossed, resulted in severe motor neuron synaptic failure and death. This work demonstrates that a miRNA can govern distinct gene network outputs at different expression levels and that miRNA-dependent phenotypes emerge at particular dose ranges because of hidden regulatory inflection points of their underlying gene networks.
Insights
Altering microRNA (miRNA) levels in motor neurons reveals complex gene regulation. Specific miRNA doses trigger critical thresholds, leading to motor neuron disease and synaptic failure.
Area of Science:
- Neuroscience
- Genetics
- Molecular Biology
Background:
- Homeostatic microRNA (miRNA) dysregulation is linked to human neuropathologies.
- The impact of varying miRNA abundance, not just gain or loss, on gene regulation and phenotypes is poorly understood.
Purpose of the Study:
- To investigate the in vivo gene regulatory and phenotypic consequences of altering microRNA-218 (miR-218) levels in motor neurons.
- To explore how different expression levels of a single miRNA affect gene networks and cellular function.
Main Methods:
- Generation of an allelic series of mice with genetically engineered, varying levels of miR-218 expression.
- Analysis of target mRNA dose responses and gene network outputs across the miR-218 allelic series.
Main Results:
- Observed complex, non-ratiometric target mRNA dose responses to miR-218 titration.
- Identified a non-linearly responsive gene regulon with a steep miR-218 dose-dependent repression threshold.
- Demonstrated that crossing this threshold leads to severe motor neuron synaptic failure and lethality.
Conclusions:
- A single microRNA can control distinct gene network outputs depending on its expression level.
- MicroRNA-dependent phenotypes arise at specific dose ranges due to hidden regulatory inflection points in gene networks.
- This study highlights the critical importance of precise miRNA dosage in maintaining motor neuron health and preventing disease.
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