Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Karyotyping01:17

Karyotyping

64.1K
Overview
64.1K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.5K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.5K
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

292
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
292
Genomics02:02

Genomics

38.1K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
38.1K
Applications of Molecular Taxonomy01:20

Applications of Molecular Taxonomy

225
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
225

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread.

Journal of parallel and distributed computing·2024
Same author

Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub.

PLoS medicine·2024
Same author

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support.

The international journal of high performance computing applications·2024
Same author

Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty.

Nature communications·2023
Same author

Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the U.S. COVID-19 Scenario Modeling Hub.

medRxiv : the preprint server for health sciences·2023
Same author

Informing pandemic response in the face of uncertainty. <i>An evaluation of the U.S. COVID-19 Scenario Modeling Hub</i>.

medRxiv : the preprint server for health sciences·2023

Related Experiment Video

Updated: Oct 22, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.5K

Methods and Developments in Graphical Pangenomics.

Joseph Outten1, Andrew Warren1

  • 1Biocomplexity Institute, University of Virginia, Charlottesville, USA.

Journal of the Indian Institute of Science
|August 30, 2021
PubMed
Summary

Graphical pangenomics uses graph-based models to analyze genomic data. Recent advancements offer new tools for mapping, genome creation, and analysis, improving our understanding of biological questions.

Keywords:
Genome assemblyGraph genomesGraphical pangenomicsMultiple sequence alignmentPangenomics

More Related Videos

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
09:10

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

Published on: May 22, 2018

9.4K
Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform
09:30

Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform

Published on: August 17, 2022

3.2K

Related Experiment Videos

Last Updated: Oct 22, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.5K
A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
09:10

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

Published on: May 22, 2018

9.4K
Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform
09:30

Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform

Published on: August 17, 2022

3.2K

Area of Science:

  • Genomics
  • Bioinformatics

Background:

  • Pangenomes represent organized genomic information from related individuals.
  • Graphical pangenomics employs graphical methods for biological analysis.

Purpose of the Study:

  • To review recent advancements in graphical pangenomics.
  • To discuss new models, algorithms, and tools in the field.
  • To explore the future implications for genomics.

Main Methods:

  • Review of recent literature on graphical pangenomics.
  • Analysis of new graph-based models and algorithms.
  • Comparison of existing pangenome analysis tools.

Main Results:

  • Significant progress in graph-based models for resolving biological phenomena.
  • An increase in new tools for read mapping, graphical genome construction, and pangenome analysis.
  • Identification of key developments in algorithms and comparative tool analysis.

Conclusions:

  • Graphical pangenomics is rapidly evolving with advanced tools and models.
  • These developments promise to enhance the resolution of biological phenomena.
  • The field is poised for significant impact on the future of genomics.