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Updated: Oct 22, 2025

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Novel fusion sarcomas including targetable NTRK and ALK
Tiane Chen1, Ying Wang1, Lianna Goetz1
1Penn State Health/Milton S. Hershey Medical Center/Penn State College of Medicine, United States of America; Penn State Health/Milton S. Hershey Medical Center/Penn State College of Medicine, Department of Pathology, United States of America.
This study identifies novel fusion sarcoma subtypes, including KANK1-NTRK2 and ERC1-ALK, highlighting the importance of molecular diagnostics for targeted therapies in challenging cancer cases.
Area of Science:
- Oncology
- Molecular Pathology
- Genomics
Background:
- Distinctive molecular signatures in emerging cancers necessitate advanced diagnostic algorithms.
- Fusion sarcomas present diagnostic challenges requiring integrated clinicoradiologic, morphologic, and molecular analysis.
Observation:
- Six fusion sarcomas (2020-2021) were analyzed using clinicoradiology, morphology, phenotype, and next-generation sequencing (NGS).
- Tumors included novel KANK1-NTRK2 and ERC1-ALK fusions, alongside CIC-DUX4 and STAT6-NAB2 fusions.
- Patient ages ranged from 2 to 73 years, with tumors located in the chest wall, neck, or extremities.
Findings:
- A novel KANK1-NTRK2 sarcoma exhibited aggressive behavior with metastases.
- An ERC1-ALK fusion sarcoma, a low-grade infiltrative tumor, responded successfully to ALK-inhibitor therapy (Crizotinib).
- CIC-DUX4 tumors showed rapid metastasis, and a solitary fibrous tumor presented with intermediate-risk stratification.
Implications:
- The identification of new fusion partners like KANK1 and TPR in NTRK/ALK sarcomas suggests unusual high-grade morphology and behavior.
- Integrated diagnostic approaches combining clinicoradiologic, morphologic, and molecular data are crucial for accurate sarcoma classification.
- Targeted therapies, such as ALK inhibitors, offer promising treatment avenues for specific fusion-driven sarcomas, potentially avoiding extensive surgery.
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