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Updated: Oct 19, 2025

Simultaneous Measurement of HDAC1 and HDAC6 Activity in HeLa Cells Using UHPLC-MS
Published on: August 10, 2017
Rational Design and Development of HDAC Inhibitors for Breast Cancer Treatment
Deepansh Mody1, Julie Bouckaert2, Savvas N Savvides3
1Department of Biotechnology, Jaypee Institute of Information Technology, A-10, Sector-62, Noida, UP, 201307, India.
Background:
Breast cancer is the most prevalent cancer amongst females across the globe, and with over 2 million new cases reported in 2018, it poses a huge economic burden to the already dwindling public health. A dearth of therapies in the pipeline to treat triple-negative breast cancers and acquisition of resistance against the existing line of treatments urge the need to strategize novel therapeutics in order to add new drugs to the pipeline. HDAC inhibitors (HDACi) is one such class of small molecule inhibitors that target histone deacetylases to bring about chromosomal remodelling and normalize dysregulated gene expression that marks breast cancer progression.
Objective:
While four HDACi have been approved by the FDA for the treatment of different cancer types, no HDACi is specifically earmarked for clinical management of breast cancer. Owing to the differential HDAC expression pertaining to different types of breast cancers, isoform-selective HDAC inhibitors need to be discovered.
Conclusion:
This review attempts to set the stage for the rational structure-based discovery of isoform-selective HDACi by providing structural insights into different HDACs and their catalytic folds based on their classes and individual landscape. The development of inhibitors in accordance with the differential expression of HDAC isoforms exhibited in breast cancer cells is a promising strategy to rationally design selective and effective inhibitors, adopting a 'personalized-medicine' approach.
Insights
Developing novel histone deacetylase inhibitors (HDACi) is crucial for breast cancer treatment. This review explores structural insights for designing isoform-selective HDAC inhibitors, advancing personalized medicine approaches.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Breast cancer is a leading global cancer in women, with over 2 million cases in 2018, causing significant public health and economic strain.
- Limited therapeutic options exist for triple-negative breast cancers, and resistance to current treatments necessitates novel therapeutic strategies.
- Histone deacetylase inhibitors (HDACi) are small molecules targeting histone deacetylases, offering potential for chromosomal remodeling and correcting gene expression in breast cancer.
Purpose of the Study:
- To review structural insights of histone deacetylases (HDACs) and their catalytic folds.
- To guide the rational structure-based discovery of isoform-selective HDAC inhibitors for breast cancer.
- To explore a personalized medicine approach for developing targeted breast cancer therapeutics.
Main Methods:
- Review of structural data for various HDAC isoforms.
- Analysis of differential HDAC expression in breast cancer subtypes.
- Exploration of structure-based drug design principles.
Main Results:
- Identification of structural differences among HDAC isoforms.
- Understanding the landscape of HDAC expression in different breast cancer types.
- Highlighting the potential of isoform-selective inhibition.
Conclusions:
- Rational structure-based design of isoform-selective HDAC inhibitors is a promising strategy for breast cancer.
- Targeting specific HDAC isoforms based on their expression in breast cancer cells can lead to effective and selective inhibitors.
- This approach aligns with personalized medicine principles for improved breast cancer treatment.
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