Related Experiment Video
Updated: Oct 19, 2025

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement
Timothy S Strutzenberg1, Yingmin Zhu2, Scott J Novick1
1Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Retinoic acid receptor-related orphan receptor γ (RORγ) undergoes DNA-dependent conformational changes, influencing how it interacts with coregulators. This structural insight is key for understanding RORγ
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- Retinoic acid receptor-related orphan receptor γ (RORγ) is a nuclear receptor crucial for metabolism, immunity, and cancer.
- RORγ's function relies on recruiting coregulatory proteins, but its full-length complex assembly is poorly understood.
- Current structural data primarily focuses on the RORγ ligand-binding domain and short coregulator peptides.
Purpose of the Study:
- To investigate the ligand-dependent assembly of full-length RORγ:coregulator complexes on DNA response elements.
- To elucidate the structural mechanisms governing RORγ target gene regulation.
- To explore how DNA binding influences RORγ conformation and coregulator interaction.
Main Methods:
- Structural proteomics
- Small-angle X-ray scattering (SAXS)
- Analysis of full-length RORγ:coregulator complexes
Main Results:
- RORγ elongates upon DNA recognition, limiting interdomain communication.
- The DNA-binding domain adopts a sequence-specific conformation.
- Coregulatory proteins may sense the ligand- and DNA-bound state of RORγ.
Conclusions:
- A model is proposed where DNA sequence influences ligand-dependent coregulator recruitment by RORγ.
- DNA-dependent conformational changes are critical for regulating full-length RORγ activity.
- Findings provide insights into orphan nuclear receptor gene regulation.
Related Concept Videos
Cooperative Binding of Transcription Regulators
Co-activators and Co-repressors
Regulation of the Unfolded Protein Response
RNA Polymerase II Accessory Proteins
Cis-regulatory Sequences
Covalently Linked Protein Regulators

