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Updated: Oct 19, 2025

Micropatterning Transmission Electron Microscopy Grids to Direct Cell Positioning within Whole-Cell Cryo-Electron Tomography Workflows
Published on: September 13, 2021
Micropatterning Transmission Electron Microscopy Grids to Direct Cell Positioning within Whole-Cell Cryo-Electron
Bryan S Sibert1, Joseph Y Kim2, Jie E Yang1
1Department of Biochemistry, University of Wisconsin, Madison; Cryo-Electron Microscopy Research Center, Department of Biochemistry, University of Wisconsin, Madison; Midwest Center for Cryo-Electron Tomography, Department of Biochemistry, University of Wisconsin, Madison.
Micropatterning enables precise cell growth on transmission electron microscopy grids for whole-cell cryo-electron tomography (cryo-ET). This method overcomes challenges in preparing cells for high-resolution imaging in their native state.
Area of Science:
- Cell biology
- Structural biology
- Microscopy
Background:
- Whole-cell cryo-electron tomography (cryo-ET) offers high-resolution structural insights of macromolecules within cells.
- Preparing cells on transmission electron microscopy (TEM) grids for cryo-ET while maintaining physiological states presents significant challenges.
Purpose of the Study:
- To present a detailed protocol for using micropatterning to guide eukaryotic cell growth on TEM grids.
- To enable improved sample preparation for whole-cell cryo-ET.
Main Methods:
- Micropatterning involves depositing extracellular matrix (ECM) proteins in specific patterns on TEM grid foils.
- Anti-fouling coatings are applied to non-patterned areas to control cell adhesion.
- This technique supports diverse cell types and experimental systems.
Main Results:
- Micropatterning successfully directs and promotes eukaryotic cell growth on TEM grids.
- The protocol allows cells to be maintained in a near-native, physiologically relevant state.
- The method is adaptable to various cell types and complex cellular communities.
Conclusions:
- Micropatterning is a versatile technique for preparing samples for whole-cell cryo-ET.
- It facilitates studies of intracellular structures and complex biological systems.
- This approach integrates well with downstream cryo-ET workflows like cryo-CLEM and cryo-FIB.

