Epidemiology of Viruses Causing Pediatric Community Acquired Pneumonia in Shanghai During 2010-2020: What Happened Before and After the COVID-19 Outbreak?
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Updated: Oct 15, 2025

Author Spotlight: Advancements in Multiplex Detection of Respiratory Viruses
Published on: November 10, 2023
Fei Li1, Yuhan Zhang1, Peng Shi1
1Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Insights
The COVID-19 pandemic significantly reduced respiratory virus detection in children with pneumonia in Shanghai. Respiratory syncytial virus (RSV) and parainfluenza virus (PIV) were key pathogens before the pandemic.
Area of Science:
- Pediatric infectious diseases
- Virology
- Epidemiology
Background:
- Global COVID-19 outbreak led to reduced pediatric infectious disease visits.
- Understanding changes in pediatric respiratory virus patterns is crucial.
Purpose of the Study:
- Analyze trends of eight common respiratory viruses in children with community-acquired pneumonia (CAP) in Shanghai over 10 years.
- Specifically assess the impact of the COVID-19 pandemic's first year on these virus detection rates.
Main Methods:
- Retrospective observational study of 5544 hospitalized CAP cases (2010-2020).
- Direct fluorescent antibody assays used to detect respiratory syncytial virus (RSV), influenza A/B, parainfluenza virus (PIV) 1-3, adenovirus (ADV), and human metapneumovirus.
- Data analyzed for changes in virus prevalence, particularly in 2020.
Main Results:
- 20.2% of CAP cases tested positive for the eight viruses.
- Respiratory syncytial virus (RSV), parainfluenza virus 3 (PIV3), and adenovirus (ADV) were the most common pathogens.
- A sharp decline in virus detection occurred from February to August 2020, with a significant rebound in September after community reopening.
Conclusions:
- RSV and PIV are significant pathogens causing CAP in Shanghai children.
- The COVID-19 pandemic demonstrably impacted the detection rates of these key respiratory viruses in pediatric CAP cases.
Introduction:
Since the global outbreak of COVID-19, there has been a significant reduction in pediatric outpatient and emergency visits for infectious diseases. The purpose of this study was to analyze the changes in respiratory viruses in children with community-acquired pneumonia (CAP) in Shanghai in the past 10 years, especially in the first year after COVID-19.
Methods:
We conducted a retrospective, observational study; the results for eight common respiratory viruses (respiratory syncytial virus (RSV), influenza virus A and B, parainfluenza virus 1-3 (PIV), adenovirus (ADV) and human metapneumovirus) tested by direct fluorescent antibody assays in hospitalized CAP cases in Children's Hospital of Fudan University during 2010-2020 were analyzed.
Results:
Of the 5544 hospitalized CAP patients included in this study, 20.2% (1125/5544) were positive for the eight respiratory viruses. The top three pathogens were RSV, PIV3 and ADV, detected from 9.8% (543/5544), 5.3% (294/5544) and 2.0% (111/5544) of the samples, respectively. RSV had the highest positive rates among children < 2 years old. In 2020, the detection rate of all viruses showed a sharp decline from February to August compared with the previous 9 years. When the Shanghai community reopened in August 2020, the detection rate of eight viruses rebounded significantly in September.
Conclusions:
These eight respiratory viruses, especially RSV and PIV, were important pathogens of CAP in Shanghai children in the past 10 years. The COVID-19 pandemic had a significant impact on the detection rates for eight respiratory viruses in children with CAP in Shanghai.
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