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Updated: May 1, 2026

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An Optogenetic Tool to Raise Intracellular pH in Single Cells and Drive Localized Membrane Dynamics
Caitlin E T Donahue1,2, Michael D Siroky1,2, Katharine A White1,2
1Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Researchers developed a new tool using Archaerhodopsin (ArchT) to precisely control intracellular pH (pHi) in single cells. This method demonstrates that elevated pHi can directly trigger membrane ruffling and other dynamic cell behaviors.
Area of Science:
- Cell Biology
- Biophysics
- Physiology
Background:
- Intracellular pH (pHi) dynamics regulate crucial cell functions, including polarization, cytoskeleton remodeling, and migration.
- Previous studies on pH-dependent cell behaviors were limited by population-level analysis and non-specific pHi manipulation methods.
- A lack of single-cell resolution tools has impeded understanding of pHi's role in individual cell behaviors.
Purpose of the Study:
- To develop and validate a novel tool for precise, single-cell manipulation of intracellular pH (pHi).
- To investigate whether elevated pHi is sufficient to induce membrane ruffling in single cells.
- To explore the spatiotemporal relationship between pHi dynamics and single-cell behaviors.
Main Methods:
- Utilized Archaerhodopsin (ArchT), a light-driven outward proton pump, for targeted pHi increases in single cells.
- Demonstrated repeatable activation of ArchT for sustained pHi elevation (up to 45 minutes).
- Applied the ArchT tool to observe and quantify membrane ruffling and dynamics in response to controlled pHi changes.
Main Results:
- ArchT effectively induced robust and physiological increases in pHi on a minute timescale.
- Single-cell activation of ArchT rapidly drove localized membrane ruffling within seconds.
- Elevated pHi significantly increased membrane dynamics, including protrusion and retraction events, compared to controls.
Conclusions:
- Archaerhodopsin (ArchT) serves as a powerful tool for spatiotemporal control of single-cell pHi.
- Increased intracellular pH is a sufficient driver for initiating membrane ruffling and altering cell membrane dynamics.
- This technique enables direct investigation of pHi's role in various single-cell behaviors, advancing cell physiology research.
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