Processing human lymph node samples for single-cell assays
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Updated: Oct 14, 2025

Isolation of Murine Lymph Node Stromal Cells
Published on: August 19, 2014
Tobias Roider1,2,3, Berit J Brinkmann1,2,3,4, Sascha Dietrich1,2,3
1European Molecular Biology Laboratory (EMBL), 69120 Heidelberg, Germany.
Abstract:
Most non-Hodgkin's lymphomas grow exclusively in the lymph node compartment protected by the tumor microenvironment. To better understand the cellular heterogeneity and the complex interaction between malignant and non-malignant cells, experiments with primary, patient-derived samples are often indispensable. Here, we describe a time-efficient but gentle protocol to process human lymph node samples. This protocol avoids enzymatic or mechanical stress and was optimized for the purpose of generating single-cell suspension suitable for delicate assays, such as single-cell RNA sequencing. For complete details on the use and execution of this protocol, please refer to Roider et al. (2020).

