Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

RNA-seq03:21

RNA-seq

10.5K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.5K
Next-generation Sequencing03:00

Next-generation Sequencing

93.9K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
93.9K
Applications of Molecular Taxonomy01:20

Applications of Molecular Taxonomy

194
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
194
Sanger Sequencing01:57

Sanger Sequencing

761.2K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
761.2K
DNA Microarrays02:34

DNA Microarrays

18.9K
Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
18.9K
Ribosome Profiling02:24

Ribosome Profiling

3.7K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.7K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The RNA m<sup>6</sup>A landscape during human oocyte-to-embryo transition.

The EMBO journal·2025
Same author

Improving gene isoform quantification with miniQuant.

Nature biotechnology·2025
Same author

Zygotic activation of transposable elements during zebrafish early embryogenesis.

Nature communications·2025
Same author

Multiomic profiling identifies predictors of survival in African American patients with acute myeloid leukemia.

Nature genetics·2024
Same author

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

Nature methods·2024
Same author

Single-cell m<sup>6</sup>A mapping in vivo using picoMeRIP-seq.

Nature biotechnology·2023

Related Experiment Video

Updated: Oct 14, 2025

Sequencing of mRNA from Whole Blood using Nanopore Sequencing
11:26

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

14.0K

Nanopore sequencing technology, bioinformatics and applications.

Yunhao Wang1, Yue Zhao1,2, Audrey Bollas1

  • 1Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.

Nature Biotechnology
|November 9, 2021
PubMed
Summary

Nanopore sequencing technology has rapidly advanced, improving DNA and RNA analysis for genomes and transcriptomes. Further development will enhance data quality and analytical methods for diverse applications.

More Related Videos

Nanopore DNA Sequencing for Metagenomic Soil Analysis
07:33

Nanopore DNA Sequencing for Metagenomic Soil Analysis

Published on: December 14, 2017

30.9K
Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
05:45

Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example

Published on: March 11, 2020

9.0K

Related Experiment Videos

Last Updated: Oct 14, 2025

Sequencing of mRNA from Whole Blood using Nanopore Sequencing
11:26

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

14.0K
Nanopore DNA Sequencing for Metagenomic Soil Analysis
07:33

Nanopore DNA Sequencing for Metagenomic Soil Analysis

Published on: December 14, 2017

30.9K
Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
05:45

Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example

Published on: March 11, 2020

9.0K

Area of Science:

  • Genomics and Molecular Biology
  • Bioinformatics and Computational Biology

Background:

  • Nanopore sequencing technology has seen rapid advancements.
  • Improvements in accuracy, read length, and throughput are notable.

Purpose of the Study:

  • To highlight the extensive development of experimental and bioinformatics methods for nanopore long reads.
  • To showcase the diverse applications of nanopore sequencing.

Main Methods:

  • Utilizing nanopore sequencing for long DNA and RNA molecules.
  • Developing advanced bioinformatics pipelines for data analysis.

Main Results:

  • Nanopore sequencing is applied in genome assembly, full-length transcript detection, and base modification detection.
  • Specialized applications include clinical diagnostics and outbreak surveillance.

Conclusions:

  • Significant opportunities exist for enhancing data quality and analytical approaches.
  • Future developments in nanopores, base-calling, and experimental protocols are crucial.