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Updated: Oct 13, 2025

Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms
Published on: November 1, 2019
Beyond t test and ANOVA: applications of mixed-effects models for more rigorous statistical analysis in neuroscience
Zhaoxia Yu1, Michele Guindani2, Steven F Grieco3
1Department of Statistics, Donald Bren School of Information and Computer Sciences, University of California, Irvine, Irvine, CA 92697-3425, USA; The Center for Neural Circuit Mapping, University of California, Irvine, Irvine, CA 92697, USA.
Abstract:
In basic neuroscience research, data are often clustered or collected with repeated measures, hence correlated. The most widely used methods such as t test and ANOVA do not take data dependence into account and thus are often misused. This Primer introduces linear and generalized mixed-effects models that consider data dependence and provides clear instruction on how to recognize when they are needed and how to apply them. The appropriate use of mixed-effects models will help researchers improve their experimental design and will lead to data analyses with greater validity and higher reproducibility of the experimental findings.

