Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Neural Regulation01:37

Neural Regulation

40.5K
Digestion begins with a cephalic phase that prepares the digestive system to receive food. When our brain processes visual or olfactory information about food, it triggers impulses in the cranial nerves innervating the salivary glands and stomach to prepare for food.
40.5K
Propagation of Action Potentials01:23

Propagation of Action Potentials

7.4K
The propagation of an action potential refers to the process by which a nerve impulse, or "action potential," travels along a neuron.
Neurons (nerve cells) have a resting membrane potential, with a slightly negative charge inside compared to outside. This is maintained by ion channels, such as sodium (Na+) and potassium (K+) channels, which control the flow of ions. When a stimulus, like a touch or a signal from another neuron, triggers the neuron, sodium channels open, allowing sodium ions to...
7.4K
Neuroplasticity01:01

Neuroplasticity

917
Neuroplasticity reflects the brain's remarkable capacity to adapt and evolve, responding dynamically to learning, experiences, or injury by reorganizing its neural circuitry. This reorganization involves creating new neural connections and refining old ones through a series of biological processes that contribute to the brain's lifelong development and adaptability.
917
Multi-input and Multi-variable systems01:22

Multi-input and Multi-variable systems

198
Cruise control systems in cars are designed as multi-input systems to maintain a driver's desired speed while compensating for external disturbances such as changes in terrain. The block diagram for a cruise control system typically includes two main inputs: the desired speed set by the driver and any external disturbances, such as the incline of the road. By adjusting the engine throttle, the system maintains the vehicle's speed as close to the desired value as possible.
In the absence...
198
Neural Circuits01:25

Neural Circuits

1.8K
Neural circuits and neuronal pools are two of the main structures found in the nervous system. Neural circuits are networks of neurons that work together to carry out a specific task or process. They consist of interconnected neurons and glial cells, which provide structural and metabolic support.
Neuronal pools are collections of nerve cells with similar functions and interact through chemical and electrical signals. These pools include both interneurons (the central neural circuit nodes that...
1.8K
Regression Toward the Mean01:52

Regression Toward the Mean

6.5K
Regression toward the mean (“RTM”) is a phenomenon in which extremely high or low values—for example, and individual’s blood pressure at a particular moment—appear closer to a group’s average upon remeasuring. Although this statistical peculiarity is the result of random error and chance, it has been problematic across various medical, scientific, financial and psychological applications. In particular, RTM, if not taken into account, can interfere when...
6.5K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Generalization of long-range machine learning potentials in complex chemical spaces.

Digital discovery·2026
Same author

Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling.

ACS nano·2026
Same author

Mapping Still Matters: Coarse-Graining with Machine Learning Potentials.

Journal of chemical information and modeling·2026
Same author

Achieving all-atom molecular dynamics accuracy from the Poisson-Boltzmann method through machine learning.

The Journal of chemical physics·2026
Same author

Enhanced Sampling for Efficient Learning of Coarse-Grained Machine Learning Potentials.

Journal of chemical theory and computation·2025
Same author

chemtrain-deploy: A Parallel and Scalable Framework for Machine Learning Potentials in Million-Atom MD Simulations.

Journal of chemical theory and computation·2025
Same journal

Sub1 contributes to heart failure with preserved ejection fraction driven by aging in mice.

Nature communications·2026
Same journal

The BRCA1-A complex restricts replication fork reversal-dependent DNA repair in ATM deficient cells.

Nature communications·2026
Same journal

Signaling downstream of tumor-stroma interaction regulates mucinous colorectal adenocarcinoma apicobasal polarity.

Nature communications·2026
Same journal

Click-polymerized polyenamine membranes for efficient lithium extraction.

Nature communications·2026
Same journal

Joint trajectories of brain atrophy, white matter hyperintensities and cognition quantify brain maintenance.

Nature communications·2026
Same journal

Proton shuttling at electrochemical interfaces under alkaline hydrogen evolution.

Nature communications·2026
See all related articles

Related Experiment Video

Updated: Oct 12, 2025

Closed-loop Neuro-robotic Experiments to Test Computational Properties of Neuronal Networks
11:18

Closed-loop Neuro-robotic Experiments to Test Computational Properties of Neuronal Networks

Published on: March 2, 2015

10.5K

Learning neural network potentials from experimental data via Differentiable Trajectory Reweighting.

Stephan Thaler1, Julija Zavadlav2,3

  • 1Professorship of Multiscale Modeling of Fluid Materials, TUM School of Engineering and Design, Technical University of Munich, Munich, Germany. stephan.thaler@tum.de.

Nature Communications
|November 26, 2021
PubMed
Summary
This summary is machine-generated.

We introduce Differentiable Trajectory Reweighting (DiffTRe), a method for training neural network potentials using experimental data. DiffTRe accelerates learning and improves accuracy, especially when quantum mechanical data is scarce.

More Related Videos

Movement Retraining using Real-time Feedback of Performance
08:16

Movement Retraining using Real-time Feedback of Performance

Published on: January 17, 2013

13.5K
Decoding Natural Behavior from Neuroethological Embedding
08:00

Decoding Natural Behavior from Neuroethological Embedding

Published on: October 3, 2025

78

Related Experiment Videos

Last Updated: Oct 12, 2025

Closed-loop Neuro-robotic Experiments to Test Computational Properties of Neuronal Networks
11:18

Closed-loop Neuro-robotic Experiments to Test Computational Properties of Neuronal Networks

Published on: March 2, 2015

10.5K
Movement Retraining using Real-time Feedback of Performance
08:16

Movement Retraining using Real-time Feedback of Performance

Published on: January 17, 2013

13.5K
Decoding Natural Behavior from Neuroethological Embedding
08:00

Decoding Natural Behavior from Neuroethological Embedding

Published on: October 3, 2025

78

Area of Science:

  • Computational chemistry
  • Materials science
  • Machine learning

Background:

  • Neural network (NN) potentials are increasingly used in molecular dynamics (MD) simulations.
  • Current NN potentials are primarily trained using bottom-up approaches with quantum mechanical data.
  • Top-down approaches learning from experimental data face significant computational challenges.

Purpose of the Study:

  • To develop a novel method for training neural network potentials using experimental data.
  • To overcome the numerical and computational hurdles in top-down NN potential learning.
  • To enable the use of diverse experimental observables for NN potential training.

Main Methods:

  • The Differentiable Trajectory Reweighting (DiffTRe) method is presented.
  • DiffTRe bypasses direct differentiation through MD simulations for time-independent observables.
  • Thermodynamic perturbation theory is leveraged to stabilize gradient computation and accelerate learning.

Main Results:

  • DiffTRe achieves approximately two orders of magnitude speed-up in gradient computation.
  • Effective NN potentials were learned for atomistic diamond and coarse-grained water models.
  • The method successfully incorporated thermodynamic, structural, and mechanical experimental data.
  • DiffTRe generalizes existing coarse-graining methods, such as iterative Boltzmann inversion.

Conclusions:

  • DiffTRe offers an efficient and effective approach for top-down learning of neural network potentials.
  • The method facilitates the integration of experimental data, crucial when high-quality quantum mechanical data is unavailable.
  • DiffTRe represents a significant advancement in developing more accurate and versatile NN potentials.