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Published on: June 30, 2022
Discovery of highly reactive self-splicing group II introns within the mitochondrial genomes of human pathogenic
Tianshuo Liu1, Anna M Pyle1,2,3
1Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, 06520, USA.
Abstract:
Fungal pathogens represent an expanding global health threat for which treatment options are limited. Self-splicing group II introns have emerged as promising drug targets, but their development has been limited by a lack of information on their distribution and architecture in pathogenic fungi. To meet this challenge, we developed a bioinformatic workflow for scanning sequence data to identify unique RNA structural signatures within group II introns. Using this approach, we discovered a set of ubiquitous introns within thermally dimorphic fungi (genera of Blastomyces, Coccidioides and Histoplasma). These introns are the most biochemically reactive group II introns ever reported, and they self-splice rapidly under near-physiological conditions without protein cofactors. Moreover, we demonstrated the small molecule targetability of these introns by showing that they can be inhibited by the FDA-approved drug mitoxantrone in vitro. Taken together, our results highlight the utility of structure-based informatic searches for identifying riboregulatory elements in pathogens, revealing a striking diversity of reactive self-splicing introns with great promise as antifungal drug targets.
Insights
Researchers identified highly reactive self-splicing group II introns in pathogenic fungi. These fungal RNA elements are promising new targets for antifungal drugs, offering novel treatment strategies against growing global health threats.
Area of Science:
- Molecular biology
- Mycology
- Bioinformatics
Background:
- Fungal pathogens pose increasing health risks with limited treatment options.
- Self-splicing group II introns are potential antifungal drug targets but their distribution in fungi is poorly understood.
Purpose of the Study:
- To develop a bioinformatic method for identifying group II introns in pathogenic fungi.
- To characterize the distribution, structure, and reactivity of these introns.
- To assess the potential of these introns as antifungal drug targets.
Main Methods:
- Developed a bioinformatic workflow to scan sequence data for group II intron structural signatures.
- Analyzed sequence data from thermally dimorphic fungi (Blastomyces, Coccidioides, Histoplasma).
- Assessed intron self-splicing activity and inhibition by mitoxantrone in vitro.
Main Results:
- Discovered ubiquitous group II introns in Blastomyces, Coccidioides, and Histoplasma.
- These introns exhibit the highest biochemical reactivity reported for group II introns.
- Introns self-splice rapidly under physiological conditions without protein cofactors.
- Demonstrated in vitro inhibition of these introns by the FDA-approved drug mitoxantrone.
Conclusions:
- Structure-based bioinformatic searches are effective for identifying regulatory RNA elements in pathogens.
- Ubiquitous, highly reactive self-splicing group II introns in pathogenic fungi represent promising antifungal drug targets.
- These findings open new avenues for developing novel antifungal therapies.
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