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Solving the problem of imbalanced dataset with synthetic image generation for cell classification using deep

David Kupas, Balazs Harangi

    Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
    |December 11, 2021
    PubMed
    Summary

    This study introduces synthetic image generation using a variational autoencoder to address class imbalance in clinical datasets, improving abnormal cell classification by 4.52% for more effective cervical smear analysis.

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    Area of Science:

    • Medical image analysis
    • Machine learning applications in healthcare
    • Computational pathology

    Background:

    • Class imbalance and limited annotated data are significant challenges in machine learning for medical image analysis.
    • Clinical datasets, such as cervical smears from digitized Pap tests, often exhibit a majority of normal cells over abnormal ones.
    • Manual examination of thousands of cells per smear is time-consuming and labor-intensive.

    Purpose of the Study:

    • To develop a method for generating synthetic clinical images to overcome data scarcity and class imbalance.
    • To pretrain a subsequent classifier network using the generated synthetic data.
    • To improve the accuracy of classifying abnormal cells in cervical smear images.

    Main Methods:

    • Utilized a custom variational autoencoder (VAE) for synthetic image generation.
    • Applied the VAE to a clinical dataset of cervical cells.
    • Compared the performance of the VAE-based approach with existing methods and modifications.
    • Integrated VAE for pretraining a classifier network.

    Main Results:

    • Achieved a performance increase of 4.52% in classifying abnormal cells.
    • Demonstrated the effectiveness of synthetic data generation in addressing class imbalance.
    • The proposed method shows promise in enhancing the efficiency of automated cell analysis.

    Conclusions:

    • The developed variational autoencoder-based synthetic image generation effectively addresses class imbalance in clinical datasets.
    • This approach enhances the performance of abnormal cell classification, contributing to more efficient diagnostic tools.
    • The research advances the goal of creating a system to rank cervical smear samples by importance, aiding manual examination.