Allosteric Inhibition of Acinetobacter baumannii ATP Phosphoribosyltransferase by Protein:Dipeptide and

Benjamin J Read1, Gemma Fisher1, Oliver L R Wissett1

  • 1School of Biology, Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.

ACS Infectious Diseases
|December 20, 2021
PubMed

Insights

Acinetobacter baumannii ATP phosphoribosyltransferase (ATPPRT) has a unique rapid equilibrium random kinetic mechanism. Understanding its inhibition by histidine and histidine-proline is key for developing new antibiotics against pneumonia.

Area of Science:

  • Biochemistry
  • Microbiology
  • Drug Discovery

Background:

  • ATP phosphoribosyltransferase (ATPPRT) is crucial for histidine biosynthesis in bacteria.
  • In Acinetobacter baumannii, ATPPRT is essential for lung persistence during pneumonia.
  • Targeting ATPPRT presents a promising strategy for novel antibiotic development.

Purpose of the Study:

  • To elucidate the kinetic mechanism of Acinetobacter baumannii ATPPRT.
  • To characterize the inhibition kinetics of histidine and histidine-proline on A. baumannii ATPPRT.
  • To explore the inhibitory potential of related HisZ proteins.

Main Methods:

  • Enzyme kinetics assays were employed to determine the reaction mechanism.
  • Binding kinetics and rapid kinetics analyses were performed to study inhibitor interactions.
  • Sequence identity comparison was used for related HisZ proteins.

Main Results:

  • A. baumannii ATPPRT exhibits a unique rapid equilibrium random kinetic mechanism.
  • Histidine noncompetitively inhibits ATPPRT, binding with similar affinity to various enzyme complexes.
  • Histidine-proline inhibits ATPPRT competitively against PRPP and uncompetitively against ATP, binding via a two-step mechanism.

Conclusions:

  • The unique kinetic properties of A. baumannii ATPPRT offer specific inhibition opportunities.
  • Understanding the binding of histidine and histidine-proline provides a basis for rational inhibitor design.
  • A related HisZ protein acts as a potent allosteric inhibitor, further supporting therapeutic targeting.

Related Concept Videos

Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
6.0K
Factors Affecting Protein-Drug Binding: Drug Interactions01:23

Factors Affecting Protein-Drug Binding: Drug Interactions

Drug interactions are a critical aspect of pharmacology and can occur when two or more drugs compete for the same binding site. This competition can result in one drug displacing another, altering the effect of the displaced drug. Drug interactions are complex processes that rely heavily on how much of the displacer drug is present and how strongly it can bind to the same sites as the displaced drug.
Displacement interactions can have varying outcomes, ranging from toxicity to virtually...
330
Allosteric Regulation01:08

Allosteric Regulation

Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
60.7K
ATP Synthase: Mechanism01:48

ATP Synthase: Mechanism

In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased...
15.5K
The Electron Transport Chain01:30

The Electron Transport Chain

The electron transport chain or oxidative phosphorylation is an exothermic process in which free energy released during electron transfer reactions is coupled to ATP synthesis. This process is a significant source of energy in aerobic cells, and therefore inhibitors of the electron transport chain can be detrimental to the cell's metabolic processes.
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q...
18.0K
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
8.2K