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Updated: Oct 9, 2025

Bio-layer Interferometry for Measuring Kinetics of Protein-protein Interactions and Allosteric Ligand Effects
Published on: February 18, 2014
Allosteric Inhibition of Acinetobacter baumannii ATP Phosphoribosyltransferase by Protein:Dipeptide and
Benjamin J Read1, Gemma Fisher1, Oliver L R Wissett1
1School of Biology, Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.
Insights
Acinetobacter baumannii ATP phosphoribosyltransferase (ATPPRT) has a unique rapid equilibrium random kinetic mechanism. Understanding its inhibition by histidine and histidine-proline is key for developing new antibiotics against pneumonia.
Area of Science:
- Biochemistry
- Microbiology
- Drug Discovery
Background:
- ATP phosphoribosyltransferase (ATPPRT) is crucial for histidine biosynthesis in bacteria.
- In Acinetobacter baumannii, ATPPRT is essential for lung persistence during pneumonia.
- Targeting ATPPRT presents a promising strategy for novel antibiotic development.
Purpose of the Study:
- To elucidate the kinetic mechanism of Acinetobacter baumannii ATPPRT.
- To characterize the inhibition kinetics of histidine and histidine-proline on A. baumannii ATPPRT.
- To explore the inhibitory potential of related HisZ proteins.
Main Methods:
- Enzyme kinetics assays were employed to determine the reaction mechanism.
- Binding kinetics and rapid kinetics analyses were performed to study inhibitor interactions.
- Sequence identity comparison was used for related HisZ proteins.
Main Results:
- A. baumannii ATPPRT exhibits a unique rapid equilibrium random kinetic mechanism.
- Histidine noncompetitively inhibits ATPPRT, binding with similar affinity to various enzyme complexes.
- Histidine-proline inhibits ATPPRT competitively against PRPP and uncompetitively against ATP, binding via a two-step mechanism.
Conclusions:
- The unique kinetic properties of A. baumannii ATPPRT offer specific inhibition opportunities.
- Understanding the binding of histidine and histidine-proline provides a basis for rational inhibitor design.
- A related HisZ protein acts as a potent allosteric inhibitor, further supporting therapeutic targeting.
Abstract:
ATP phosphoribosyltransferase (ATPPRT) catalyzes the first step of histidine biosynthesis in bacteria, namely, the condensation of ATP and 5-phospho-α-d-ribosyl-1-pyrophosphate (PRPP) to generate N1-(5-phospho-β-d-ribosyl)-ATP (PRATP) and pyrophosphate. Catalytic (HisGS) and regulatory (HisZ) subunits assemble in a hetero-octamer where HisZ activates HisGS and mediates allosteric inhibition by histidine. In Acinetobacter baumannnii, HisGS is necessary for the bacterium to persist in the lung during pneumonia. Inhibition of ATPPRT is thus a promising strategy for specific antibiotic development. Here, A. baumannii ATPPRT is shown to follow a rapid equilibrium random kinetic mechanism, unlike any other ATPPRT. Histidine noncompetitively inhibits ATPPRT. Binding kinetics indicates histidine binds to free ATPPRT and to ATPPRT:PRPP and ATPPRT:ATP binary complexes with similar affinity following a two-step binding mechanism, but with distinct kinetic partition of the initial enzyme:inhibitor complex. The dipeptide histidine-proline inhibits ATPPRT competitively and likely uncompetitively, respectively, against PRPP and ATP. Rapid kinetics analysis shows His-Pro binds to the ATPPRT:ATP complex via a two-step binding mechanism. A related HisZ that shares 43% sequence identity with A. baumannii HisZ is a tight-binding allosteric inhibitor of A. baumannii HisGS. These findings lay the foundation for inhibitor design against A. baumannii ATPPRT.
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