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Updated: Oct 5, 2025

A Simple Method to Identify Kinases That Regulate Embryonic Stem Cell Pluripotency by High-throughput Inhibitor Screening
Published on: May 12, 2017
Selective elimination of pluripotent stem cells by PIKfyve specific inhibitors
Arup R Chakraborty1, Alex Vassilev1, Sushil K Jaiswal1
1National Institute of Child Health & Human Development, National Institutes of Health, Bldg. 6A/3A15, 6 Center Drive, Bethesda, MD 20892-2790, USA.
Abstract:
Inhibition of PIKfyve phosphoinositide kinase selectively kills autophagy-dependent cancer cells by disrupting lysosome homeostasis. Here, we show that PIKfyve inhibitors can also selectively eliminate pluripotent embryonal carcinoma cells (ECCs), embryonic stem cells, and induced pluripotent stem cells under conditions where differentiated cells remain viable. PIKfyve inhibitors prevented lysosome fission, induced autophagosome accumulation, and reduced cell proliferation in both pluripotent and differentiated cells, but they induced death only in pluripotent cells. The ability of PIKfyve inhibitors to distinguish between pluripotent and differentiated cells was confirmed with xenografts derived from ECCs. Pretreatment of ECCs with the PIKfyve specific inhibitor WX8 suppressed their ability to form teratocarcinomas in mice, and intraperitoneal injections of WX8 into mice harboring teratocarcinoma xenografts selectively eliminated pluripotent cells. Differentiated cells continued to proliferate, but at a reduced rate. These results provide a proof of principle that PIKfyve specific inhibitors can selectively eliminate pluripotent stem cells in vivo as well as in vitro.
Insights
PIKfyve inhibitors selectively eliminate pluripotent stem cells by disrupting lysosome function. This targeted approach shows promise for eliminating cancer stem cells while sparing normal cells.
Area of Science:
- Cell Biology
- Cancer Research
- Stem Cell Biology
Background:
- PIKfyve phosphoinositide kinase regulates lysosome homeostasis and is crucial for autophagy-dependent cancer cell survival.
- Pluripotent stem cells, including embryonal carcinoma cells (ECCs), embryonic stem cells, and induced pluripotent stem cells, possess unique vulnerabilities.
- Targeting specific cellular pathways offers a strategy for selective cancer therapy.
Purpose of the Study:
- To investigate the selective elimination of pluripotent stem cells by PIKfyve inhibitors.
- To determine the mechanism by which PIKfyve inhibition affects pluripotent versus differentiated cells.
- To evaluate the in vivo efficacy of PIKfyve inhibitors in eliminating pluripotent cancer cells.
Main Methods:
- Treatment of pluripotent and differentiated cells with PIKfyve inhibitors.
- Analysis of lysosome fission, autophagosome accumulation, and cell proliferation.
- Xenograft studies using ECC-derived teratocarcinomas and PIKfyve inhibitor WX8 in mice.
Main Results:
- PIKfyve inhibitors selectively induced death in pluripotent cells while sparing differentiated cells.
- Inhibition of PIKfyve prevented lysosome fission and increased autophagosome accumulation in both cell types.
- In vivo studies demonstrated that WX8 selectively eliminated pluripotent ECCs in teratocarcinoma xenografts.
- Differentiated cells exhibited reduced proliferation but not death upon PIKfyve inhibition.
Conclusions:
- PIKfyve inhibitors exhibit selective toxicity towards pluripotent stem cells, including cancer stem cells.
- Disruption of lysosome homeostasis by PIKfyve inhibition is the key mechanism for selective cell death.
- PIKfyve inhibitors represent a potential therapeutic strategy for targeting and eliminating pluripotent cancer cells in vitro and in vivo.
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