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Updated: Oct 3, 2025

Investigating the Pathogenesis of MYH7 Mutation Gly823Glu in Familial Hypertrophic Cardiomyopathy using a Mouse Model
Published on: August 8, 2022
Susceptibility Modules and Genes in Hypertrophic Cardiomyopathy by WGCNA and ceRNA Network Analysis
Yifan Sun1, Zhongbo Xiao1, Yequn Chen1
1Department of Cardiology, First Affiliated Hospital of Shantou University Medical College, Shantou, China.
Insights
Researchers identified a regulatory network and hub gene, Insulin-like Growth Factor Binding Protein 5 (IGFBP5), in Hypertrophic Cardiomyopathy (HCM). This discovery offers potential molecular mechanisms for HCM diagnosis and treatment.
Area of Science:
- Genomics
- Molecular Biology
- Cardiovascular Research
Background:
- Hypertrophic Cardiomyopathy (HCM) is a complex genetic heart disease.
- Identifying regulatory networks and key genes is crucial for understanding HCM pathogenesis.
Purpose of the Study:
- To identify a competing endogenous RNA (ceRNA) network in HCM.
- To pinpoint a hub gene involved in HCM progression.
Main Methods:
- Utilized microarray datasets from NCBI GEO database.
- Applied R package 'limma' for differential gene expression analysis.
- Constructed ceRNA networks using online databases and WGCNA.
- Performed Gene Set Enrichment Analysis (GSEA) for functional annotation.
Main Results:
- Identified 269 differentially expressed lncRNAs, 63 miRNAs, and 879 mRNAs.
- Discovered specific miRNA-lncRNA-mRNA interactions potentially regulating HCM.
- Identified Insulin-like Growth Factor Binding Protein 5 (IGFBP5) as a key hub gene.
- GSEA indicated IGFBP5's role in myosin complex synthesis and actin cytoskeleton regulation.
Conclusions:
- The study proposes a molecular regulatory mechanism for HCM.
- IGFBP5 may play a significant role in the development and progression of HCM.
- Findings offer potential targets for HCM diagnosis and therapy.
Abstract:
Background: We attempted to identify a regulatory competing endogenous RNA (ceRNA) network and a hub gene of Hypertrophic Cardiomyopathy (HCM). Methods: Microarray datasets of HCM tissue were obtained from NCBI Gene Expression Omnibus (GEO) database. The R package "limma" was used to identify differentially expressed genes. Online search databases were utilized to match the relation among differentially expressed long non-coding RNAs (lncRNAs), microRNAs (miRNAs) and mRNAs. Weighted correlation network analysis (WGCNA) was used to identify the correlations between key modules and HCM. STRING database was applied to construct PPI networks. Gene Set Enrichment Analysis (GSEA) was used to perform functional annotations and verified the hub genes. Results: A total of 269 DE-lncRNAs, 63 DE-miRNAs and 879 DE-mRNAs were identified in myocardial tissues from microarray datasets GSE130036, GSE36946 and GSE36961, respectively. According to online databases, we found 1 upregulated miRNA hsa-miR-184 that was targeted by 2 downregulated lncRNAs (SNHG9, AC010980.2), potentially targeted 2 downregulated mRNAs (LRRC8A, SLC7A5). 3 downregulated miRNAs (hsa-miR-17-5p, hsa-miR-876-3p, hsa-miR-139-5p) that were targeted by 9 upregulated lncRNAs, potentially targeted 21 upregulated mRNAs. Black and blue modules significantly related to HCM were identified by WGCNA. Hub gene IGFBP5 regulated by hsa-miR-17-5p, AC007389.5, AC104667.1, and AC002511.2 was identified. GSEA indicated that IGFBP5 might involve in the synthesis of myosin complex, participate in kinesin binding, motor activity and function via the regulation of actin cytoskeleton. Conclusion: The results provide a potential molecular regulatory mechanism for the diagnosis and treatment of HCM. IGFBP5 might play an important role in the progression of HCM.
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