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Updated: Oct 1, 2025

Swabbing the Urban Environment - A Pipeline for Sampling and Detection of SARS-CoV-2 From Environmental Reservoirs
Published on: April 9, 2021
Revisiting SARS-CoV-2 environmental contamination by patients with COVID-19: The Omicron variant does not differ from
Itai Glinert1, Amir Ben-Shmuel1, Moran Szwartcwort-Cohen2
1Department of Infectious Diseases, Israel Institute for Biological Research, Ness-Ziona, Israel.
Abstract:
SARS-CoV-2 Omicron strain emergence raised concerns that its enhanced infectivity is partly due to altered spread/contamination modalities. We therefore sampled high-contact surfaces and air in close proximity to patients who were verified as infected with the Omicron strain, using identical protocols applied to sample patients positive to the original or Alpha strains. Cumulatively, for all 3 strains, viral RNA was detected in 90 of 168 surfaces and 6 of 49 air samples (mean cycle threshold [Ct]=35.2±2.5). No infective virus was identified. No significant differences in prevalence were found between strains.
Insights
The Omicron variant of SARS-CoV-2 did not show significant differences in surface or air contamination compared to earlier strains. No infectious virus was detected, suggesting similar spread modalities across variants.
Area of Science:
- Virology
- Infectious Diseases
- Public Health
Background:
- The emergence of the SARS-CoV-2 Omicron strain prompted concerns regarding potentially altered spread and contamination.
- Understanding contamination routes is crucial for effective infection control strategies.
Purpose of the Study:
- To investigate and compare the prevalence of SARS-CoV-2 RNA on surfaces and in the air around patients infected with the Omicron strain versus original and Alpha strains.
- To determine if Omicron exhibits altered contamination modalities compared to previous SARS-CoV-2 variants.
Main Methods:
- Environmental sampling of high-contact surfaces and air near patients infected with SARS-CoV-2 Omicron, original, and Alpha strains.
- Utilized identical sampling protocols across all patient groups for direct comparison.
- Viral RNA detection using established methods, with attempts to identify infectious virus.
Main Results:
- Viral RNA was detected in a significant proportion of surface samples (90/168) and a smaller fraction of air samples (6/49) across all tested strains.
- No statistically significant differences in the prevalence of viral RNA on surfaces or in the air were observed between the Omicron, original, and Alpha strains.
- Crucially, no infectious SARS-CoV-2 virus was identified in any of the collected samples.
Conclusions:
- The Omicron strain does not appear to significantly alter the prevalence of viral RNA on environmental surfaces or in the air compared to earlier SARS-CoV-2 strains.
- The absence of infectious virus in environmental samples suggests that surface and air contamination may not be a primary driver of the increased transmissibility observed with Omicron.
- Findings indicate that standard infection control measures remain relevant for managing SARS-CoV-2 transmission, irrespective of the dominant strain.
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