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Updated: Sep 29, 2025

Visualizing Hyporheic Flow Through Bedforms Using Dye Experiments and Simulation
Published on: November 18, 2015
Self-phoretic Brownian dynamics simulations
Sergi Roca-Bonet1, Marisol Ripoll2
1Theoretical Physics of Living Matter, Institute of Biological Information Processing, Forschungszentrum Jülich, 52425, Jülich, Germany. s.roca@fz-juelich.de.
Abstract:
A realistic and effective model to simulate phoretic Brownian dynamics swimmers based on the general form of the thermophoretic force is here presented. The collective behavior of self-phoretic dimers is investigated with this model and compared with two simpler versions, allowing the understanding of the subtle interplay of steric interactions, propulsion, and phoretic effects. The phoretic Brownian dynamics method has control parameters which can be tuned to closely map the properties of experiments or simulations with explicit solvent, in particular those performed with multiparticle collision dynamics. The combination of the phoretic Brownian method and multiparticle collision dynamics is a powerful tool to precisely identify the importance of hydrodynamic interactions in systems of self-phoretic swimmers.
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