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Stress tensor and constant pressure simulation for polarizable Gaussian multipole model
Haixin Wei1, Piotr Cieplak2, Yong Duan3
1Departments of Materials Science and Engineering, Molecular Biology and Biochemistry, Chemical and Biomolecular Engineering, and Biomedical Engineering, Graduate Program in Chemical and Materials Physics, University of California, Irvine, Irvine, California 92697, USA.
This study introduces the polarizable Gaussian multipole (pGM) internal stress tensor for molecular dynamics (MD) simulations. The new method ensures stable simulations and balances external pressure, offering insights beyond classic point charge models.
Area of Science:
- Computational Chemistry
- Molecular Dynamics Simulations
- Physical Chemistry
Background:
- Previous work established the theory for molecular dynamics (MD) simulations using polarizable Gaussian multipole (pGM) electrostatics.
- The covalent basis vector framework and closed-form energy/force expressions were developed for efficient pGM implementation.
Purpose of the Study:
- To derive the pGM internal stress tensor for constant pressure MD simulations.
- To present formulations for flexible, rigid, and short-range screened systems.
- To validate the implementation and assess simulation behavior compared to point charge models.
Main Methods:
- Derivation of analytical formulations for the pGM internal stress tensor.
- Implementation within the SANDER program of the Amber package.
- Validation using finite-difference methods and constant temperature/pressure MD simulations of pGM water molecules.
Main Results:
- Successful derivation and implementation of the pGM internal stress tensor.
- MD simulations of pGM water molecules stabilized at physically reasonable states, balancing external pressure.
- Observed fundamental differences in simulation behavior between pGM and classic point charge models.
Conclusions:
- The derived pGM internal stress tensor enables stable constant pressure MD simulations.
- The pGM model exhibits distinct behaviors compared to point charge models, highlighting the need for further parameterization.
- This work advances the application of pGM electrostatics in molecular simulations.
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