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Updated: Sep 29, 2025

Investigating the Pathogenesis of MYH7 Mutation Gly823Glu in Familial Hypertrophic Cardiomyopathy using a Mouse Model
Published on: August 8, 2022
Identification of Potential Diagnostic Biomarkers and Biological Pathways in Hypertrophic Cardiomyopathy Based on
Tingyan Yu1, Zhaoxu Huang1, Zhaoxia Pu1
1Department of Cardiology, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310009, China.
Insights
Hypertrophic cardiomyopathy (HCM) is a genetic heart condition. This study identified LYVE1, MAFB, and MT1M as potential biomarkers for HCM, suggesting roles for oxidative stress and inflammation in its development.
Area of Science:
- Genetics
- Cardiology
- Bioinformatics
Background:
- Hypertrophic cardiomyopathy (HCM) is a genetic disorder and a leading cause of sudden cardiac death in young individuals.
- Accurate diagnosis and effective treatment strategies for HCM remain challenging due to its genetic heterogeneity.
Purpose of the Study:
- To identify potential diagnostic biomarkers for HCM using bioinformatics analysis.
- To elucidate biological pathways associated with HCM pathogenesis.
Main Methods:
- Analysis of the GSE36961 dataset to identify differentially expressed genes (DEGs).
- Weighted gene coexpression network analysis (WGCNA) to identify key gene modules.
- Least absolute shrinkage and selection operator (LASSO) modeling to pinpoint key genes.
- Validation of gene expression in the GSE130036 dataset.
- Gene Set Enrichment Analysis (GSEA) to identify relevant biological pathways.
Main Results:
- 893 DEGs were identified, with the turquoise module showing a strong negative correlation with HCM.
- LYVE1, MAFB, and MT1M were identified as key genes associated with HCM.
- GSEA indicated that oxidative phosphorylation, TNFα-NFκB, IFNγ response, and inflammatory response pathways are potentially linked to HCM.
Conclusions:
- LYVE1, MAFB, and MT1M are proposed as potential diagnostic biomarkers for HCM.
- Oxidative stress, immune response, and inflammatory response are likely involved in the pathogenesis of HCM.
- These findings may aid in the diagnosis and treatment of HCM.
Abstract:
Hypertrophic cardiomyopathy (HCM) is a genetic heterogeneous disorder and the main cause of sudden cardiac death in adolescents and young adults. This study was aimed at identifying potential diagnostic biomarkers and biological pathways to help to diagnose and treat HCM through bioinformatics analysis. We selected the GSE36961 dataset from the Gene Expression Omnibus (GEO) database and identified 893 differentially expressed genes (DEGs). Subsequently, 12 modules were generated through weighted gene coexpression network analysis (WGCNA), and the turquoise module showed the highest negative correlation with HCM (cor = −0.9, p-value = 4 × 10−52). With the filtering standard gene significance (GS) < −0.7 and module membership (MM) > 0.9, 19 genes were then selected to establish the least absolute shrinkage and selection operator (LASSO) model, and LYVE1, MAFB, and MT1M were finally identified as key genes. The expression levels of these genes were additionally verified in the GSE130036 dataset. Gene Set Enrichment Analysis (GSEA) showed oxidative phosphorylation, tumor necrosis factor alpha-nuclear factor-κB (TNFα-NFκB), interferon-gamma (IFNγ) response, and inflammatory response were four pathways possibly related to HCM. In conclusion, LYVE1, MAFB, and MT1M were potential biomarkers of HCM, and oxidative stress, immune response as well as inflammatory response were likely to be associated with the pathogenesis of HCM.
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