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Updated: Sep 27, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Interpretation of ensemble learning to predict water quality using explainable artificial intelligence.
Jungsu Park1, Woo Hyoung Lee2, Keug Tae Kim3
1Department of Civil and Environmental Engineering, Hanbat National University,125, Dongseo-daero, Yuseong-gu, Daejeon 34158, Republic of Korea.
Predicting algal blooms using machine learning is crucial for safe drinking water. Shapley value (SHAP) analysis effectively selected key variables, improving XGBoost model performance for chlorophyll-a concentration prediction.
Area of Science:
- Environmental Science
- Water Quality Management
- Machine Learning Applications
Background:
- Algal blooms pose significant risks to freshwater quality and drinking water safety.
- Chlorophyll-a (Chl-a) concentration is a key indicator for estimating algal presence.
- Accurate prediction of Chl-a is essential for effective water resource management.
Purpose of the Study:
- To develop and evaluate an XGBoost machine learning model for predicting Chl-a concentration.
- To assess the impact of input variable selection on model performance using Explainable Artificial Intelligence (XAI).
- To identify the most effective method for prioritizing input variables for improved prediction accuracy.
Main Methods:
- An XGBoost ensemble model was trained using eighteen input variables.
- Input variable selection was guided by Shapley value (SHAP), feature importance (FI), and variance inflation factor (VIF).
- Model performance was evaluated using metrics such as RMSE, RMSE-observation standard deviation ratio, and Nash-Sutcliffe efficiency.
Main Results:
- The XGBoost model demonstrated the most stable and accurate performance when input variables were prioritized using SHAP analysis.
- SHAP analysis provided consistent and interpretable insights into the relative importance of input variables.
- XAI techniques, including SHAP plots, enhanced the understanding of the XGBoost model's predictive behavior.
Conclusions:
- SHAP-based variable selection is a highly effective strategy for optimizing machine learning models in water quality prediction.
- Implementing SHAP analysis can lead to more cost-effective on-site monitoring by focusing on critical input variables.
- This study highlights the successful application of XAI in improving the interpretability and reliability of water quality prediction models.
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